SOLTUB.AGRIA.G00000005677

Description : Methyl-cpg-binding domain protein 4-like protein

Gene families : OG_02_0007828 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000005677
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_44

Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	None	Extended
BP	GO:0000077	DNA damage checkpoint signaling	None	Extended
MF	GO:0000700	mismatch base pair DNA N-glycosylase activity	None	Extended
CC	GO:0000785	chromatin	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	AHRD
BP	GO:0006304	DNA modification	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0007093	mitotic cell cycle checkpoint signaling	None	Extended
BP	GO:0007095	mitotic G2 DNA damage checkpoint signaling	IEA	AHRD
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007346	regulation of mitotic cell cycle	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008263	pyrimidine-specific mismatch base pair DNA N-glycosylase activity	IEA	AHRD
BP	GO:0008630	intrinsic apoptotic signaling pathway in response to DNA damage	IEA	AHRD
BP	GO:0009314	response to radiation	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	None	Extended
BP	GO:0010564	regulation of cell cycle process	None	Extended
BP	GO:0010948	negative regulation of cell cycle process	None	Extended
BP	GO:0010972	negative regulation of G2/M transition of mitotic cell cycle	None	Extended
CC	GO:0016604	nuclear body	None	Extended
CC	GO:0016607	nuclear speck	IEA	AHRD
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	None	Extended
MF	GO:0019104	DNA N-glycosylase activity	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0031570	DNA integrity checkpoint signaling	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0042770	signal transduction in response to DNA damage	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044773	mitotic DNA damage checkpoint signaling	None	Extended
BP	GO:0044774	mitotic DNA integrity checkpoint signaling	None	Extended
BP	GO:0044818	mitotic G2/M transition checkpoint	None	Extended
BP	GO:0045786	negative regulation of cell cycle	None	Extended
BP	GO:0045930	negative regulation of mitotic cell cycle	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097190	apoptotic signaling pathway	None	Extended
BP	GO:0097193	intrinsic apoptotic signaling pathway	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901987	regulation of cell cycle phase transition	None	Extended
BP	GO:1901988	negative regulation of cell cycle phase transition	None	Extended
BP	GO:1901990	regulation of mitotic cell cycle phase transition	None	Extended
BP	GO:1901991	negative regulation of mitotic cell cycle phase transition	None	Extended
BP	GO:1902749	regulation of cell cycle G2/M phase transition	None	Extended
BP	GO:1902750	negative regulation of cell cycle G2/M phase transition	None	Extended
BP	GO:1903047	mitotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001701	in utero embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0001837	epithelial to mesenchymal transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0001893	maternal placenta development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002200	somatic diversification of immune receptors	IEP	Predict GO terms from Neighborhoods
BP	GO:0002562	somatic diversification of immune receptors via germline recombination within a single locus	IEP	Predict GO terms from Neighborhoods
BP	GO:0002566	somatic diversification of immune receptors via somatic mutation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002761	regulation of myeloid leukocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002763	positive regulation of myeloid leukocyte differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004107	chorismate synthase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005703	polytene chromosome puff	IEP	Predict GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Predict GO terms from Neighborhoods
CC	GO:0005844	polysome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005849	mRNA cleavage factor complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006285	base-excision repair, AP site formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006287	base-excision repair, gap-filling	IEP	Predict GO terms from Neighborhoods
BP	GO:0006289	nucleotide-excision repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	Predict GO terms from Neighborhoods
BP	GO:0006379	mRNA cleavage	IEP	Predict GO terms from Neighborhoods
BP	GO:0006403	RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006405	RNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006915	apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006954	inflammatory response	IEP	Predict GO terms from Neighborhoods
BP	GO:0007015	actin filament organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007163	establishment or maintenance of cell polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0007316	pole plasm RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007319	negative regulation of oskar mRNA translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007399	nervous system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007435	salivary gland morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0008069	dorsal/ventral axis specification, ovarian follicular epithelium	IEP	Predict GO terms from Neighborhoods
MF	GO:0008187	poly-pyrimidine tract binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008266	poly(U) RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008298	intracellular mRNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009423	chorismate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009556	microsporogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0009574	preprophase band	IEP	Predict GO terms from Neighborhoods
BP	GO:0009798	axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009950	dorsal/ventral axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010048	vernalization response	IEP	Predict GO terms from Neighborhoods
MF	GO:0010181	FMN binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010632	regulation of epithelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010634	positive regulation of epithelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016325	oocyte microtubule cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0016334	establishment or maintenance of polarity of follicular epithelium	IEP	Predict GO terms from Neighborhoods
BP	GO:0016444	somatic cell DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0016445	somatic diversification of immunoglobulins	IEP	Predict GO terms from Neighborhoods
BP	GO:0016446	somatic hypermutation of immunoglobulin genes	IEP	Predict GO terms from Neighborhoods
BP	GO:0016447	somatic recombination of immunoglobulin gene segments	IEP	Predict GO terms from Neighborhoods
MF	GO:0016829	lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Predict GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019094	pole plasm mRNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0022612	gland morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030099	myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0030145	manganese ion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0030175	filopodium	IEP	Predict GO terms from Neighborhoods
BP	GO:0030218	erythrocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030261	chromosome condensation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030263	apoptotic chromosome condensation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030335	positive regulation of cell migration	IEP	Predict GO terms from Neighborhoods
MF	GO:0030371	translation repressor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030720	oocyte localization involved in germarium-derived egg chamber formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030832	regulation of actin filament length	IEP	Predict GO terms from Neighborhoods
BP	GO:0030833	regulation of actin filament polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030834	regulation of actin filament depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030835	negative regulation of actin filament depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030837	negative regulation of actin filament polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030951	establishment or maintenance of microtubule cytoskeleton polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030952	establishment or maintenance of cytoskeleton polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031333	negative regulation of protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0031981	nuclear lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032271	regulation of protein polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032272	negative regulation of protein polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0033119	negative regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0033120	positive regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0033151	V(D)J recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0033152	immunoglobulin V(D)J recombination	IEP	Predict GO terms from Neighborhoods
MF	GO:0034046	poly(G) binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0034061	DNA polymerase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0035062	omega speckle	IEP	Predict GO terms from Neighborhoods
CC	GO:0035145	exon-exon junction complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0035613	RNA stem-loop binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043186	P granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0043242	negative regulation of protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043484	regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045010	actin nucleation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045451	pole plasm oskar mRNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045637	regulation of myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045639	positive regulation of myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045655	regulation of monocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045657	positive regulation of monocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046011	regulation of oskar mRNA translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046417	chorismate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0048025	negative regulation of mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0048026	positive regulation of mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0048027	mRNA 5'-UTR binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0048236	plant-type sporogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048534	hematopoietic or lymphoid organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048535	lymph node development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048536	spleen development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048762	mesenchymal cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048864	stem cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048869	cellular developmental process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048872	homeostasis of number of cells	IEP	Predict GO terms from Neighborhoods
BP	GO:0050657	nucleic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050658	RNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050684	regulation of mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0050685	positive regulation of mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0050686	negative regulation of mRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0051015	actin filament binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051016	barbed-end actin filament capping	IEP	Predict GO terms from Neighborhoods
BP	GO:0051017	actin filament bundle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051168	nuclear export	IEP	Predict GO terms from Neighborhoods
BP	GO:0051236	establishment of RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051239	regulation of multicellular organismal process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051402	neuron apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0051575	5'-deoxyribose-5-phosphate lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051674	localization of cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0051693	actin filament capping	IEP	Predict GO terms from Neighborhoods
BP	GO:0060135	maternal process involved in female pregnancy	IEP	Predict GO terms from Neighborhoods
BP	GO:0060810	intracellular mRNA localization involved in pattern specification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0060811	intracellular mRNA localization involved in anterior/posterior axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0061572	actin filament bundle organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0061574	ASAP complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0070717	poly-purine tract binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070997	neuron death	IEP	Predict GO terms from Neighborhoods
BP	GO:0071216	cellular response to biotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071707	immunoglobulin heavy chain V-D-J recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0071897	DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072396	response to cell cycle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0072402	response to DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0072423	response to DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0090617	mitochondrial mRNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0097510	base-excision repair, AP site formation via deaminated base removal	IEP	Predict GO terms from Neighborhoods
BP	GO:0098787	mRNA cleavage involved in mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0098789	pre-mRNA cleavage required for polyadenylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0098858	actin-based cell projection	IEP	Predict GO terms from Neighborhoods
CC	GO:0099080	supramolecular complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0099522	cytosolic region	IEP	Predict GO terms from Neighborhoods
CC	GO:0099523	presynaptic cytosol	IEP	Predict GO terms from Neighborhoods
BP	GO:0110053	regulation of actin filament organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1901879	regulation of protein depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:1901880	negative regulation of protein depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:1902105	regulation of leukocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902107	positive regulation of leukocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902904	negative regulation of supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1903311	regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903312	negative regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903684	regulation of border follicle cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:1903688	positive regulation of border follicle cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:1903706	regulation of hemopoiesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1903708	positive regulation of hemopoiesis	IEP	Predict GO terms from Neighborhoods
BP	GO:2000147	positive regulation of cell motility	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011257	DNA_glycosylase	436	568

External Links

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SOLTUB.AGRIA.G00000005677

Expression Profile

Co-expression Networks

Functional Annotation