SOLTUB.AGRIA.G00000010402

Description : Superoxide dismutase [fe], putative

Gene families : OG_02_0008359 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000010402
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_130

Type	GO Term	Name	Evidence	Source
BP	GO:0000302	response to reactive oxygen species	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004784	superoxide dismutase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006801	superoxide metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
BP	GO:0007623	circadian rhythm	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009295	nucleoid	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	IEA	AHRD
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009534	chloroplast thylakoid	IEA	AHRD
CC	GO:0009579	thylakoid	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009642	response to light intensity	IEA	AHRD
CC	GO:0009941	chloroplast envelope	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010193	response to ozone	IEA	AHRD
CC	GO:0016020	membrane	None	Extended
MF	GO:0016209	antioxidant activity	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	None	Extended
BP	GO:0019430	removal of superoxide radicals	IEA	AHRD
MF	GO:0019904	protein domain specific binding	IEA	AHRD
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042644	chloroplast nucleoid	IEA	AHRD
CC	GO:0042646	plastid nucleoid	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEA	AHRD
BP	GO:0046688	response to copper ion	IEA	AHRD
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0072593	reactive oxygen species metabolic process	None	Extended
BP	GO:0098754	detoxification	None	Extended
BP	GO:0098869	cellular oxidant detoxification	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1990748	cellular detoxification	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0000120	RNA polymerase I transcription regulator complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000154	rRNA modification	IEP	Predict GO terms from Neighborhoods
CC	GO:0000500	RNA polymerase I upstream activating factor complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0001163	RNA polymerase I transcription regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001165	RNA polymerase I cis-regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001181	RNA polymerase I general transcription initiation factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001508	action potential	IEP	Predict GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002027	regulation of heart rate	IEP	Predict GO terms from Neighborhoods
BP	GO:0002028	regulation of sodium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0003007	heart morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0003205	cardiac chamber development	IEP	Predict GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004222	metalloendopeptidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005745	m-AAA complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006360	transcription by RNA polymerase I	IEP	Predict GO terms from Neighborhoods
BP	GO:0006361	transcription initiation at RNA polymerase I promoter	IEP	Predict GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006937	regulation of muscle contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0006942	regulation of striated muscle contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0007009	plasma membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007253	cytoplasmic sequestering of NF-kappaB	IEP	Predict GO terms from Neighborhoods
BP	GO:0007264	small GTPase mediated signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0007409	axonogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0008016	regulation of heart contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008187	poly-pyrimidine tract binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008266	poly(U) RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008320	protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008360	regulation of cell shape	IEP	Predict GO terms from Neighborhoods
CC	GO:0008540	proteasome regulatory particle, base subcomplex	IEP	Predict GO terms from Neighborhoods
BP	GO:0009303	rRNA transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Predict GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009527	plastid outer membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009531	secondary cell wall	IEP	Predict GO terms from Neighborhoods
CC	GO:0009535	chloroplast thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009925	basal plasma membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0010319	stromule	IEP	Predict GO terms from Neighborhoods
BP	GO:0010765	positive regulation of sodium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0010821	regulation of mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010823	negative regulation of mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010882	regulation of cardiac muscle contraction by calcium ion signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0010981	regulation of cell wall macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0015450	protein-transporting ATPase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016464	chloroplast protein-transporting ATPase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016553	base conversion or substitution editing	IEP	Predict GO terms from Neighborhoods
MF	GO:0019003	GDP binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0019684	photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
MF	GO:0019901	protein kinase binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030832	regulation of actin filament length	IEP	Predict GO terms from Neighborhoods
BP	GO:0030833	regulation of actin filament polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030834	regulation of actin filament depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031329	regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031672	A band	IEP	Predict GO terms from Neighborhoods
CC	GO:0031674	I band	IEP	Predict GO terms from Neighborhoods
BP	GO:0032088	negative regulation of NF-kappaB transcription factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032271	regulation of protein polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032411	positive regulation of transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032414	positive regulation of ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0032794	GTPase activating protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032950	regulation of beta-glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032951	regulation of beta-glucan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032970	regulation of actin filament-based process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033365	protein localization to organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0034357	photosynthetic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034982	mitochondrial protein processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0042170	plastid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0042383	sarcolemma	IEP	Predict GO terms from Neighborhoods
CC	GO:0042651	thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0042790	nucleolar large rRNA transcription by RNA polymerase I	IEP	Predict GO terms from Neighborhoods
BP	GO:0042994	cytoplasmic sequestering of transcription factor	IEP	Predict GO terms from Neighborhoods
BP	GO:0043248	proteasome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043268	positive regulation of potassium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043409	negative regulation of MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0043433	negative regulation of DNA-binding transcription factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043489	RNA stabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0043516	regulation of DNA damage response, signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:0043518	negative regulation of DNA damage response, signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
CC	GO:0044304	main axon	IEP	Predict GO terms from Neighborhoods
BP	GO:0045036	protein targeting to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0045037	protein import into chloroplast stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0045111	intermediate filament cytoskeleton	IEP	Predict GO terms from Neighborhoods
CC	GO:0045177	apical part of cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0045185	maintenance of protein location	IEP	Predict GO terms from Neighborhoods
BP	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048766	root hair initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050808	synapse organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051220	cytoplasmic sequestering of protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0051279	regulation of release of sequestered calcium ion into cytosol	IEP	Predict GO terms from Neighborhoods
BP	GO:0051282	regulation of sequestering of calcium ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0051648	vesicle localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051650	establishment of vesicle localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051928	positive regulation of calcium ion transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0055035	plastid thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0055117	regulation of cardiac muscle contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0061061	muscle structure development	IEP	Predict GO terms from Neighborhoods
CC	GO:0062091	Ycf2/FtsHi complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0070682	proteasome regulatory particle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0071902	positive regulation of protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0072598	protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0086001	cardiac muscle cell action potential	IEP	Predict GO terms from Neighborhoods
BP	GO:0086002	cardiac muscle cell action potential involved in contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0086004	regulation of cardiac muscle cell contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0086015	SA node cell action potential	IEP	Predict GO terms from Neighborhoods
BP	GO:0086065	cell communication involved in cardiac conduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0086066	atrial cardiac muscle cell to AV node cell communication	IEP	Predict GO terms from Neighborhoods
BP	GO:0090199	regulation of release of cytochrome c from mitochondria	IEP	Predict GO terms from Neighborhoods
BP	GO:0090201	negative regulation of release of cytochrome c from mitochondria	IEP	Predict GO terms from Neighborhoods
BP	GO:0090257	regulation of muscle system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090379	secondary cell wall biogenesis involved in seed trichome differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0098781	ncRNA transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0098900	regulation of action potential	IEP	Predict GO terms from Neighborhoods
BP	GO:0098901	regulation of cardiac muscle cell action potential	IEP	Predict GO terms from Neighborhoods
MF	GO:0140223	general transcription initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140318	protein transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900864	mitochondrial RNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:1901016	regulation of potassium ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901019	regulation of calcium ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901259	chloroplast rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:1901379	regulation of potassium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1901796	regulation of signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:1901797	negative regulation of signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:1901879	regulation of protein depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:1902369	negative regulation of RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903115	regulation of actin filament-based movement	IEP	Predict GO terms from Neighborhoods
BP	GO:1903169	regulation of calcium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903522	regulation of blood circulation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904031	positive regulation of cyclin-dependent protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904064	positive regulation of cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2001006	regulation of cellulose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2001009	regulation of plant-type cell wall cellulose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2001021	negative regulation of response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:2001257	regulation of cation channel activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036314	SOD_C_sf	136	264
IPR019832	Mn/Fe_SOD_C	141	259
IPR036324	Mn/Fe_SOD_N_sf	47	135
IPR019831	Mn/Fe_SOD_N	49	134

External Links

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SOLTUB.AGRIA.G00000010402

Expression Profile

Co-expression Networks

Functional Annotation