Coexpression cluster: Cluster_104 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0046741 transport of virus in host, tissue to tissue 5.88% (4/68) 7.36 0.0 8e-06
GO:0044001 migration in host 5.88% (4/68) 6.47 0.0 4e-05
GO:0046739 transport of virus in multicellular host 5.88% (4/68) 6.47 0.0 4e-05
GO:0043621 protein self-association 11.76% (8/68) 3.2 3e-06 0.000425
GO:0051707 response to other organism 38.24% (26/68) 1.35 2e-06 0.000449
GO:0046794 transport of virus 5.88% (4/68) 5.47 2e-06 0.000523
GO:0044419 biological process involved in interspecies interaction between organisms 38.24% (26/68) 1.31 4e-06 0.00055
GO:0010088 phloem development 5.88% (4/68) 5.06 7e-06 0.000816
GO:0043207 response to external biotic stimulus 38.24% (26/68) 1.25 8e-06 0.000819
GO:0046658 anchored component of plasma membrane 8.82% (6/68) 3.69 8e-06 0.000822
GO:0009607 response to biotic stimulus 38.24% (26/68) 1.23 1.1e-05 0.00093
GO:0044000 movement in host 5.88% (4/68) 4.88 1.1e-05 0.000968
GO:0010087 phloem or xylem histogenesis 11.76% (8/68) 2.74 2.5e-05 0.00191
GO:0009615 response to virus 10.29% (7/68) 2.97 3.2e-05 0.00222
GO:0009605 response to external stimulus 41.18% (28/68) 1.05 4.9e-05 0.00322
GO:0042542 response to hydrogen peroxide 8.82% (6/68) 3.09 7.6e-05 0.004385
GO:0031225 anchored component of membrane 8.82% (6/68) 3.1 7.3e-05 0.004472
GO:0051701 biological process involved in interaction with host 5.88% (4/68) 3.95 0.000137 0.007453
GO:0009510 plasmodesmatal desmotubule 2.94% (2/68) 6.71 0.000162 0.008391
GO:0090279 regulation of calcium ion import 2.94% (2/68) 6.58 0.000195 0.009555
GO:0042803 protein homodimerization activity 13.24% (9/68) 2.1 0.000235 0.010986
GO:0005227 calcium activated cation channel activity 2.94% (2/68) 6.08 0.000399 0.017799
GO:0000302 response to reactive oxygen species 10.29% (7/68) 2.37 0.000417 0.0178
GO:0022839 ion gated channel activity 2.94% (2/68) 6.0 0.000448 0.018335
GO:0006970 response to osmotic stress 17.65% (12/68) 1.61 0.000474 0.018638
GO:0051259 protein complex oligomerization 7.35% (5/68) 2.93 0.000515 0.019444
GO:0008381 mechanosensitive ion channel activity 2.94% (2/68) 5.85 0.000555 0.019472
GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane 2.94% (2/68) 5.85 0.000555 0.019472
GO:0014070 response to organic cyclic compound 16.18% (11/68) 1.66 0.000651 0.022033
GO:0016032 viral process 5.88% (4/68) 3.33 0.000685 0.022436
GO:0071786 endoplasmic reticulum tubular network organization 2.94% (2/68) 5.64 0.000737 0.022612
GO:0031226 intrinsic component of plasma membrane 8.82% (6/68) 2.48 0.000733 0.023234
GO:0044403 biological process involved in symbiotic interaction 10.29% (7/68) 2.18 0.000876 0.026079
GO:0098542 defense response to other organism 25.0% (17/68) 1.17 0.001023 0.027913
GO:0009751 response to salicylic acid 10.29% (7/68) 2.14 0.001063 0.02821
GO:0090601 enucleation 2.94% (2/68) 5.41 0.001018 0.028553
GO:0090602 sieve element enucleation 2.94% (2/68) 5.41 0.001018 0.028553
GO:0071470 cellular response to osmotic stress 5.88% (4/68) 3.12 0.001197 0.030921
GO:0016798 hydrolase activity, acting on glycosyl bonds 8.82% (6/68) 2.3 0.001359 0.032545
GO:0006952 defense response 27.94% (19/68) 1.05 0.001297 0.032651
GO:0090059 protoxylem development 2.94% (2/68) 5.21 0.001342 0.03295
GO:0006950 response to stress 45.59% (31/68) 0.7 0.001461 0.034153
GO:0005975 carbohydrate metabolic process 13.24% (9/68) 1.71 0.001656 0.035347
GO:0016020 membrane 45.59% (31/68) 0.69 0.001652 0.036057
GO:0046983 protein dimerization activity 13.24% (9/68) 1.71 0.00162 0.036163
GO:0019215 intermediate filament binding 1.47% (1/68) 9.17 0.00174 0.036348
GO:0006979 response to oxidative stress 13.24% (9/68) 1.71 0.001606 0.036684
GO:0006076 (1->3)-beta-D-glucan catabolic process 2.94% (2/68) 5.0 0.001808 0.036993
GO:0034720 histone H3-K4 demethylation 2.94% (2/68) 4.85 0.002229 0.043772
GO:0048759 xylem vessel member cell differentiation 2.94% (2/68) 4.85 0.002229 0.043772
GO:0090057 root radial pattern formation 2.94% (2/68) 4.81 0.00234 0.045064
GO:0071474 cellular hyperosmotic response 2.94% (2/68) 4.77 0.002455 0.046355
GO:1901348 positive regulation of secondary cell wall biogenesis 2.94% (2/68) 4.71 0.002691 0.048935
GO:1903340 positive regulation of cell wall organization or biogenesis 2.94% (2/68) 4.71 0.002691 0.048935
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_106 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_130 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_136 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_142 0.015 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_146 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_161 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_210 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_240 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_38 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_40 0.018 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_60 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_79 0.015 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_102 0.01 Orthogroups with 8 Potato genotypes Compare
Sequences (68) (download table)

InterPro Domains

GO Terms

Family Terms