Coexpression cluster: Cluster_55 (HCCA Clusters (HRR 50 & PCC 0.5))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0008300 isoprenoid catabolic process 9.84% (6/61) 4.6 0.0 9.5e-05
GO:0016115 terpenoid catabolic process 9.84% (6/61) 4.68 0.0 0.00014
GO:0009692 ethylene metabolic process 6.56% (4/61) 5.42 2e-06 0.000255
GO:0009693 ethylene biosynthetic process 6.56% (4/61) 5.42 2e-06 0.000255
GO:0043449 cellular alkene metabolic process 6.56% (4/61) 5.42 2e-06 0.000255
GO:0043450 alkene biosynthetic process 6.56% (4/61) 5.42 2e-06 0.000255
GO:0016128 phytosteroid metabolic process 8.2% (5/61) 4.38 4e-06 0.000288
GO:0009719 response to endogenous stimulus 34.43% (21/61) 1.52 4e-06 0.000304
GO:0033993 response to lipid 29.51% (18/61) 1.74 3e-06 0.000312
GO:1900673 olefin metabolic process 6.56% (4/61) 5.22 4e-06 0.000319
GO:1900674 olefin biosynthetic process 6.56% (4/61) 5.22 4e-06 0.000319
GO:0010268 brassinosteroid homeostasis 6.56% (4/61) 5.26 4e-06 0.000331
GO:0006720 isoprenoid metabolic process 18.03% (11/61) 2.66 1e-06 0.000374
GO:0009725 response to hormone 34.43% (21/61) 1.62 1e-06 0.000386
GO:0016131 brassinosteroid metabolic process 8.2% (5/61) 4.57 2e-06 0.000403
GO:0120254 olefinic compound metabolic process 11.48% (7/61) 3.58 2e-06 0.000418
GO:0043255 regulation of carbohydrate biosynthetic process 9.84% (6/61) 3.57 1.2e-05 0.000717
GO:0009651 response to salt stress 19.67% (12/61) 2.05 2.6e-05 0.000787
GO:0004497 monooxygenase activity 13.11% (8/61) 2.73 2.6e-05 0.000808
GO:0004364 glutathione transferase activity 6.56% (4/61) 4.57 2.5e-05 0.000828
GO:0050616 secologanin synthase activity 4.92% (3/61) 5.74 2.5e-05 0.000835
GO:0006714 sesquiterpenoid metabolic process 6.56% (4/61) 4.58 2.5e-05 0.000851
GO:0010439 regulation of glucosinolate biosynthetic process 6.56% (4/61) 4.58 2.5e-05 0.000851
GO:0004824 lysine-tRNA ligase activity 3.28% (2/61) 8.0 2.4e-05 0.000887
GO:0006430 lysyl-tRNA aminoacylation 3.28% (2/61) 8.0 2.4e-05 0.000887
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 14.75% (9/61) 2.55 2.1e-05 0.000888
GO:0044242 cellular lipid catabolic process 9.84% (6/61) 3.5 1.5e-05 0.000889
GO:0016105 triterpenoid catabolic process 4.92% (3/61) 5.82 2.1e-05 0.000906
GO:0019741 pentacyclic triterpenoid catabolic process 4.92% (3/61) 5.82 2.1e-05 0.000906
GO:1902381 11-oxo-beta-amyrin metabolic process 4.92% (3/61) 5.82 2.1e-05 0.000906
GO:1902382 11-oxo-beta-amyrin catabolic process 4.92% (3/61) 5.82 2.1e-05 0.000906
GO:1902384 glycyrrhetinate metabolic process 4.92% (3/61) 5.82 2.1e-05 0.000906
GO:1902386 glycyrrhetinate biosynthetic process 4.92% (3/61) 5.82 2.1e-05 0.000906
GO:0050595 7-deoxyloganin 7-hydroxylase activity 4.92% (3/61) 5.78 2.3e-05 0.000914
GO:0006721 terpenoid metabolic process 13.11% (8/61) 2.69 3.2e-05 0.000964
GO:0010896 regulation of triglyceride catabolic process 3.28% (2/61) 7.74 3.6e-05 0.001034
GO:0006109 regulation of carbohydrate metabolic process 11.48% (7/61) 2.92 3.8e-05 0.001066
GO:0019745 pentacyclic triterpenoid biosynthetic process 4.92% (3/61) 5.35 5.6e-05 0.001528
GO:0010353 response to trehalose 3.28% (2/61) 7.32 6.7e-05 0.001691
GO:0042445 hormone metabolic process 11.48% (7/61) 2.79 6.6e-05 0.001723
GO:0080046 quercetin 4'-O-glucosyltransferase activity 4.92% (3/61) 5.24 7.1e-05 0.001727
GO:0120251 hydrocarbon biosynthetic process 11.48% (7/61) 2.8 6.5e-05 0.001734
GO:0006749 glutathione metabolic process 6.56% (4/61) 4.19 7e-05 0.001738
GO:0062131 3-butenylglucosinolate 2-hydroxylase activity 4.92% (3/61) 5.21 7.6e-05 0.001749
GO:0010119 regulation of stomatal movement 11.48% (7/61) 2.76 7.8e-05 0.001762
GO:1901615 organic hydroxy compound metabolic process 14.75% (9/61) 2.31 7.6e-05 0.001785
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 4.92% (3/61) 5.15 8.5e-05 0.001875
GO:0120252 hydrocarbon metabolic process 11.48% (7/61) 2.71 9.5e-05 0.001985
GO:0009687 abscisic acid metabolic process 4.92% (3/61) 5.1 9.5e-05 0.002006
GO:0043288 apocarotenoid metabolic process 4.92% (3/61) 5.1 9.5e-05 0.002006
GO:0016042 lipid catabolic process 9.84% (6/61) 3.0 0.000104 0.002125
GO:0008299 isoprenoid biosynthetic process 13.11% (8/61) 2.44 0.000107 0.002133
GO:0016104 triterpenoid biosynthetic process 4.92% (3/61) 4.98 0.000122 0.002394
GO:0042182 ketone catabolic process 4.92% (3/61) 4.91 0.000141 0.002662
GO:0006629 lipid metabolic process 22.95% (14/61) 1.61 0.000139 0.00268
GO:1901700 response to oxygen-containing compound 36.07% (22/61) 1.14 0.000149 0.002776
GO:0006970 response to osmotic stress 19.67% (12/61) 1.77 0.000165 0.00301
GO:1902644 tertiary alcohol metabolic process 4.92% (3/61) 4.76 0.000192 0.003436
GO:0042221 response to chemical 45.9% (28/61) 0.91 0.000202 0.00356
GO:0048527 lateral root development 8.2% (5/61) 3.22 0.000206 0.003578
GO:0019742 pentacyclic triterpenoid metabolic process 4.92% (3/61) 4.7 0.000217 0.003693
GO:0044248 cellular catabolic process 21.31% (13/61) 1.63 0.000223 0.003747
GO:0042762 regulation of sulfur metabolic process 6.56% (4/61) 3.74 0.000237 0.003905
GO:0043290 apocarotenoid catabolic process 3.28% (2/61) 6.42 0.000248 0.003972
GO:0046345 abscisic acid catabolic process 3.28% (2/61) 6.42 0.000248 0.003972
GO:0010033 response to organic substance 37.7% (23/61) 1.05 0.000257 0.003994
GO:0010224 response to UV-B 8.2% (5/61) 3.15 0.000254 0.004009
GO:0018871 1-aminocyclopropane-1-carboxylate metabolic process 3.28% (2/61) 6.32 0.000283 0.004038
GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process 3.28% (2/61) 6.32 0.000283 0.004038
GO:0016107 sesquiterpenoid catabolic process 3.28% (2/61) 6.32 0.000283 0.004038
GO:0009835 fruit ripening 6.56% (4/61) 3.69 0.000266 0.004067
GO:0008202 steroid metabolic process 8.2% (5/61) 3.11 0.000292 0.004104
GO:0044255 cellular lipid metabolic process 19.67% (12/61) 1.68 0.000296 0.004111
GO:0009737 response to abscisic acid 16.39% (10/61) 1.92 0.000274 0.004128
GO:0048528 post-embryonic root development 8.2% (5/61) 3.12 0.000281 0.00418
GO:0043295 glutathione binding 4.92% (3/61) 4.52 0.000315 0.004253
GO:1900750 oligopeptide binding 4.92% (3/61) 4.52 0.000315 0.004253
GO:0010675 regulation of cellular carbohydrate metabolic process 8.2% (5/61) 3.06 0.000334 0.004449
GO:0090696 post-embryonic plant organ development 8.2% (5/61) 3.04 0.000358 0.004657
GO:0016134 saponin metabolic process 6.56% (4/61) 3.58 0.000357 0.0047
GO:0009407 toxin catabolic process 4.92% (3/61) 4.43 0.000373 0.004792
GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity 3.28% (2/61) 6.08 0.000403 0.005107
GO:0006575 cellular modified amino acid metabolic process 6.56% (4/61) 3.5 0.000439 0.005496
GO:0006722 triterpenoid metabolic process 4.92% (3/61) 4.31 0.00048 0.005877
GO:0120255 olefinic compound biosynthetic process 6.56% (4/61) 3.47 0.000476 0.005896
GO:0019842 vitamin binding 6.56% (4/61) 3.45 0.0005 0.006045
GO:0035834 indole alkaloid metabolic process 6.56% (4/61) 3.39 0.000585 0.006991
GO:0120256 olefinic compound catabolic process 3.28% (2/61) 5.8 0.000593 0.007013
GO:0009873 ethylene-activated signaling pathway 6.56% (4/61) 3.35 0.00065 0.007596
GO:0097305 response to alcohol 16.39% (10/61) 1.75 0.000693 0.007922
GO:0019752 carboxylic acid metabolic process 18.03% (11/61) 1.64 0.000693 0.008005
GO:0042181 ketone biosynthetic process 4.92% (3/61) 4.08 0.000769 0.00869
GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity 3.28% (2/61) 5.57 0.00082 0.008976
GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen 3.28% (2/61) 5.57 0.00082 0.008976
GO:2000082 regulation of L-ascorbic acid biosynthetic process 3.28% (2/61) 5.57 0.00082 0.008976
GO:0072341 modified amino acid binding 4.92% (3/61) 3.98 0.000936 0.010135
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen 6.56% (4/61) 3.2 0.000963 0.010325
GO:1901361 organic cyclic compound catabolic process 9.84% (6/61) 2.33 0.001218 0.01293
GO:0000160 phosphorelay signal transduction system 6.56% (4/61) 3.09 0.001289 0.013545
GO:0055088 lipid homeostasis 6.56% (4/61) 3.05 0.001402 0.014585
GO:0005983 starch catabolic process 3.28% (2/61) 5.15 0.001458 0.014871
GO:0030656 regulation of vitamin metabolic process 3.28% (2/61) 5.15 0.001458 0.014871
GO:0090207 regulation of triglyceride metabolic process 3.28% (2/61) 5.11 0.00154 0.015552
GO:0009735 response to cytokinin 6.56% (4/61) 3.0 0.001594 0.015785
GO:0009056 catabolic process 21.31% (13/61) 1.32 0.001613 0.015823
GO:1901575 organic substance catabolic process 19.67% (12/61) 1.4 0.001592 0.01592
GO:0031418 L-ascorbic acid binding 3.28% (2/61) 5.04 0.00171 0.016624
GO:0018973 trinitrotoluene metabolic process 3.28% (2/61) 4.93 0.001981 0.017171
GO:0018974 2,4,6-trinitrotoluene metabolic process 3.28% (2/61) 4.93 0.001981 0.017171
GO:0019326 nitrotoluene metabolic process 3.28% (2/61) 4.93 0.001981 0.017171
GO:0046256 2,4,6-trinitrotoluene catabolic process 3.28% (2/61) 4.93 0.001981 0.017171
GO:0046260 trinitrotoluene catabolic process 3.28% (2/61) 4.93 0.001981 0.017171
GO:0046263 nitrotoluene catabolic process 3.28% (2/61) 4.93 0.001981 0.017171
GO:0072490 toluene-containing compound metabolic process 3.28% (2/61) 4.93 0.001981 0.017171
GO:0072491 toluene-containing compound catabolic process 3.28% (2/61) 4.93 0.001981 0.017171
GO:0008610 lipid biosynthetic process 14.75% (9/61) 1.66 0.002014 0.017313
GO:0010200 response to chitin 9.84% (6/61) 2.2 0.001899 0.017951
GO:0010817 regulation of hormone levels 13.11% (8/61) 1.81 0.001919 0.017978
GO:0060416 response to growth hormone 3.28% (2/61) 4.97 0.001889 0.018022
GO:0009058 biosynthetic process 31.15% (19/61) 0.99 0.001888 0.018179
GO:0062012 regulation of small molecule metabolic process 9.84% (6/61) 2.17 0.002138 0.018223
GO:1901681 sulfur compound binding 4.92% (3/61) 3.6 0.001964 0.018236
GO:0071704 organic substance metabolic process 55.74% (34/61) 0.59 0.002218 0.018753
GO:0050994 regulation of lipid catabolic process 3.28% (2/61) 4.83 0.002271 0.018897
GO:0080043 quercetin 3-O-glucosyltransferase activity 4.92% (3/61) 3.53 0.00226 0.018952
GO:0044282 small molecule catabolic process 8.2% (5/61) 2.43 0.002353 0.019269
GO:0016137 glycoside metabolic process 6.56% (4/61) 2.85 0.002346 0.019365
GO:0043436 oxoacid metabolic process 18.03% (11/61) 1.41 0.00247 0.020069
GO:0042180 cellular ketone metabolic process 4.92% (3/61) 3.48 0.002499 0.020144
GO:0043177 organic acid binding 4.92% (3/61) 3.47 0.002582 0.020653
GO:1901576 organic substance biosynthetic process 29.51% (18/61) 0.99 0.002616 0.020768
GO:1900376 regulation of secondary metabolite biosynthetic process 6.56% (4/61) 2.8 0.002643 0.020827
GO:0016135 saponin biosynthetic process 4.92% (3/61) 3.45 0.002666 0.02085
GO:0004064 arylesterase activity 1.64% (1/61) 8.32 0.003119 0.024205
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen 8.2% (5/61) 2.33 0.003175 0.024463
GO:0008395 steroid hydroxylase activity 3.28% (2/61) 4.54 0.003373 0.025794
GO:0044249 cellular biosynthetic process 27.87% (17/61) 0.99 0.003492 0.026316
GO:1901362 organic cyclic compound biosynthetic process 18.03% (11/61) 1.34 0.003475 0.026382
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 6.56% (4/61) 2.68 0.003593 0.02688
GO:0006082 organic acid metabolic process 18.03% (11/61) 1.33 0.003803 0.028253
GO:0002252 immune effector process 4.92% (3/61) 3.22 0.004147 0.030586
GO:0010449 root meristem growth 3.28% (2/61) 4.37 0.004265 0.031238
GO:0009411 response to UV 8.2% (5/61) 2.22 0.004426 0.031967
GO:0031930 mitochondria-nucleus signaling pathway 3.28% (2/61) 4.3 0.004677 0.032004
GO:0009704 de-etiolation 3.28% (2/61) 4.35 0.004401 0.032005
GO:0002276 basophil activation involved in immune response 1.64% (1/61) 7.74 0.004675 0.032196
GO:0003877 ATP adenylyltransferase activity 1.64% (1/61) 7.74 0.004675 0.032196
GO:0043032 positive regulation of macrophage activation 1.64% (1/61) 7.74 0.004675 0.032196
GO:0045575 basophil activation 1.64% (1/61) 7.74 0.004675 0.032196
GO:0006518 peptide metabolic process 8.2% (5/61) 2.2 0.004646 0.032868
GO:0098754 detoxification 6.56% (4/61) 2.57 0.004636 0.033026
GO:0010243 response to organonitrogen compound 13.11% (8/61) 1.6 0.004627 0.033183
GO:0004812 aminoacyl-tRNA ligase activity 3.28% (2/61) 4.24 0.005107 0.034269
GO:0006418 tRNA aminoacylation for protein translation 3.28% (2/61) 4.24 0.005107 0.034269
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.28% (2/61) 4.24 0.005107 0.034269
GO:0009404 toxin metabolic process 4.92% (3/61) 3.11 0.005169 0.034458
GO:0050896 response to stimulus 55.74% (34/61) 0.52 0.00521 0.034514
GO:0044281 small molecule metabolic process 21.31% (13/61) 1.12 0.005487 0.036114
GO:0043038 amino acid activation 3.28% (2/61) 4.15 0.005708 0.037101
GO:0043039 tRNA aminoacylation 3.28% (2/61) 4.15 0.005708 0.037101
GO:0000049 tRNA binding 3.28% (2/61) 4.11 0.00602 0.038884
GO:0002863 positive regulation of inflammatory response to antigenic stimulus 1.64% (1/61) 7.32 0.006228 0.039982
GO:0003824 catalytic activity 49.18% (30/61) 0.58 0.006378 0.040697
GO:0071695 anatomical structure maturation 6.56% (4/61) 2.43 0.00651 0.041035
GO:0016138 glycoside biosynthetic process 4.92% (3/61) 2.99 0.006476 0.041068
GO:0046164 alcohol catabolic process 3.28% (2/61) 4.02 0.006832 0.042805
GO:0016491 oxidoreductase activity 16.39% (10/61) 1.29 0.006925 0.043128
GO:0006520 cellular amino acid metabolic process 8.2% (5/61) 2.06 0.006986 0.043244
GO:0035266 meristem growth 3.28% (2/61) 3.97 0.007342 0.045184
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 4.92% (3/61) 2.91 0.007474 0.045724
GO:0015960 diadenosine polyphosphate biosynthetic process 1.64% (1/61) 7.0 0.007779 0.046764
GO:0015966 diadenosine tetraphosphate biosynthetic process 1.64% (1/61) 7.0 0.007779 0.046764
GO:2000030 regulation of response to red or far red light 4.92% (3/61) 2.9 0.007717 0.046932
GO:0008152 metabolic process 55.74% (34/61) 0.49 0.008215 0.049104
GO:0046394 carboxylic acid biosynthetic process 9.84% (6/61) 1.76 0.008345 0.049596
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_85 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_136 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_151 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_154 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_182 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_187 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_190 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_195 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_228 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_266 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_321 0.018 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_1 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_3 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_7 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_8 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_17 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_38 0.01 Orthogroups with 8 Potato genotypes Compare
Sequences (61) (download table)

InterPro Domains

GO Terms

Family Terms