Coexpression cluster: Cluster_203 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile



Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0010021 amylopectin biosynthetic process 4.84% (3/62) 6.98 2e-06 0.001119
GO:2000896 amylopectin metabolic process 4.84% (3/62) 6.98 2e-06 0.001119
GO:0006991 response to sterol depletion 3.23% (2/62) 8.72 7e-06 0.001947
GO:0032933 SREBP signaling pathway 3.23% (2/62) 8.72 7e-06 0.001947
GO:0071501 cellular response to sterol depletion 3.23% (2/62) 8.72 7e-06 0.001947
GO:0044247 cellular polysaccharide catabolic process 6.45% (4/62) 4.76 1.5e-05 0.001977
GO:0005983 starch catabolic process 4.84% (3/62) 5.72 2.6e-05 0.002143
GO:0045939 negative regulation of steroid metabolic process 3.23% (2/62) 7.98 2.5e-05 0.002159
GO:0019156 isoamylase activity 3.23% (2/62) 7.98 2.5e-05 0.002159
GO:0043033 isoamylase complex 3.23% (2/62) 7.98 2.5e-05 0.002159
GO:0010894 negative regulation of steroid biosynthetic process 3.23% (2/62) 8.3 1.5e-05 0.002161
GO:0045541 negative regulation of cholesterol biosynthetic process 3.23% (2/62) 8.3 1.5e-05 0.002161
GO:0090206 negative regulation of cholesterol metabolic process 3.23% (2/62) 8.3 1.5e-05 0.002161
GO:0106119 negative regulation of sterol biosynthetic process 3.23% (2/62) 8.3 1.5e-05 0.002161
GO:0044042 glucan metabolic process 9.68% (6/62) 3.26 3.9e-05 0.002299
GO:0005982 starch metabolic process 6.45% (4/62) 4.67 1.9e-05 0.002301
GO:1902931 negative regulation of alcohol biosynthetic process 3.23% (2/62) 7.72 3.7e-05 0.00231
GO:0006073 cellular glucan metabolic process 9.68% (6/62) 3.28 3.6e-05 0.002356
GO:0005977 glycogen metabolic process 4.84% (3/62) 5.6 3.3e-05 0.00243
GO:0006112 energy reserve metabolic process 4.84% (3/62) 5.6 3.3e-05 0.00243
GO:0005975 carbohydrate metabolic process 17.74% (11/62) 2.13 3.6e-05 0.002461
GO:0009251 glucan catabolic process 6.45% (4/62) 4.61 2.3e-05 0.002466
GO:0045717 negative regulation of fatty acid biosynthetic process 3.23% (2/62) 7.49 5.2e-05 0.00295
GO:0044275 cellular carbohydrate catabolic process 6.45% (4/62) 4.1 9e-05 0.004562
GO:0008066 glutamate receptor activity 3.23% (2/62) 7.13 8.8e-05 0.004643
GO:0071311 cellular response to acetate 3.23% (2/62) 7.13 8.8e-05 0.004643
GO:0031224 intrinsic component of membrane 25.81% (16/62) 1.49 0.000111 0.005402
GO:2001070 starch binding 3.23% (2/62) 6.84 0.000135 0.006103
GO:0010034 response to acetate 3.23% (2/62) 6.84 0.000135 0.006103
GO:0015276 ligand-gated ion channel activity 4.84% (3/62) 4.86 0.000155 0.006549
GO:0022834 ligand-gated channel activity 4.84% (3/62) 4.86 0.000155 0.006549
GO:0045922 negative regulation of fatty acid metabolic process 3.23% (2/62) 6.72 0.000162 0.00663
GO:0009056 catabolic process 24.19% (15/62) 1.51 0.00017 0.006745
GO:0045540 regulation of cholesterol biosynthetic process 3.23% (2/62) 6.6 0.000191 0.007367
GO:0044248 cellular catabolic process 20.97% (13/62) 1.6 0.000265 0.009932
GO:0106118 regulation of sterol biosynthetic process 3.23% (2/62) 6.3 0.000293 0.010672
GO:0016021 integral component of membrane 22.58% (14/62) 1.49 0.000324 0.011503
GO:0003674 molecular_function 80.65% (50/62) 0.43 0.000381 0.012805
GO:0044264 cellular polysaccharide metabolic process 9.68% (6/62) 2.66 0.000372 0.012839
GO:0044262 cellular carbohydrate metabolic process 11.29% (7/62) 2.37 0.000401 0.012848
GO:0016787 hydrolase activity 25.81% (16/62) 1.33 0.000394 0.012921
GO:1902182 shoot apical meristem development 3.23% (2/62) 6.05 0.000416 0.012995
GO:0009057 macromolecule catabolic process 14.52% (9/62) 1.95 0.000485 0.014794
GO:0009511 plasmodesmatal endoplasmic reticulum 3.23% (2/62) 5.91 0.00051 0.015202
GO:1901575 organic substance catabolic process 20.97% (13/62) 1.49 0.000548 0.015988
GO:0034976 response to endoplasmic reticulum stress 6.45% (4/62) 3.29 0.000766 0.021381
GO:0022890 inorganic cation transmembrane transporter activity 9.68% (6/62) 2.47 0.000758 0.021608
GO:0003824 catalytic activity 53.23% (33/62) 0.69 0.0008 0.021872
GO:0009536 plastid 17.74% (11/62) 1.59 0.000922 0.024682
GO:0090181 regulation of cholesterol metabolic process 3.23% (2/62) 5.44 0.000978 0.025653
GO:0008150 biological_process 80.65% (50/62) 0.39 0.001 0.025727
GO:0030433 ubiquitin-dependent ERAD pathway 4.84% (3/62) 3.93 0.001028 0.025937
GO:0071207 histone pre-mRNA stem-loop binding 1.61% (1/62) 9.3 0.001586 0.027382
GO:0019543 propionate catabolic process 1.61% (1/62) 9.3 0.001586 0.027382
GO:0019629 propionate catabolic process, 2-methylcitrate cycle 1.61% (1/62) 9.3 0.001586 0.027382
GO:0030603 oxaloacetase activity 1.61% (1/62) 9.3 0.001586 0.027382
GO:0046421 methylisocitrate lyase activity 1.61% (1/62) 9.3 0.001586 0.027382
GO:0047529 2,3-dimethylmalate lyase activity 1.61% (1/62) 9.3 0.001586 0.027382
GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity 1.61% (1/62) 9.3 0.001586 0.027382
GO:0047345 ribose-5-phosphate adenylyltransferase activity 1.61% (1/62) 9.3 0.001586 0.027382
GO:1902551 regulation of catalase activity 1.61% (1/62) 9.3 0.001586 0.027382
GO:1902553 positive regulation of catalase activity 1.61% (1/62) 9.3 0.001586 0.027382
GO:2000470 positive regulation of peroxidase activity 1.61% (1/62) 9.3 0.001586 0.027382
GO:0016632 oxidoreductase activity, acting on the CH-CH group of donors, cytochrome as acceptor 1.61% (1/62) 9.3 0.001586 0.027382
GO:0016633 galactonolactone dehydrogenase activity 1.61% (1/62) 9.3 0.001586 0.027382
GO:0080049 L-gulono-1,4-lactone dehydrogenase activity 1.61% (1/62) 9.3 0.001586 0.027382
GO:0036503 ERAD pathway 4.84% (3/62) 3.69 0.001675 0.028546
GO:0010930 negative regulation of auxin mediated signaling pathway 3.23% (2/62) 5.01 0.001766 0.029709
GO:0032934 sterol binding 3.23% (2/62) 4.98 0.001857 0.030459
GO:0016052 carbohydrate catabolic process 8.06% (5/62) 2.63 0.001279 0.030515
GO:0008324 cation transmembrane transporter activity 9.68% (6/62) 2.21 0.00184 0.030551
GO:0000272 polysaccharide catabolic process 6.45% (4/62) 2.93 0.001893 0.030664
GO:0006984 ER-nucleus signaling pathway 3.23% (2/62) 5.26 0.001266 0.030765
GO:0071260 cellular response to mechanical stimulus 3.23% (2/62) 5.21 0.001344 0.030936
GO:0015485 cholesterol binding 3.23% (2/62) 5.21 0.001344 0.030936
GO:0022836 gated channel activity 4.84% (3/62) 3.83 0.001258 0.031136
GO:0015146 pentose transmembrane transporter activity 3.23% (2/62) 4.94 0.001951 0.031209
GO:0048578 positive regulation of long-day photoperiodism, flowering 3.23% (2/62) 5.17 0.001424 0.031666
GO:0019252 starch biosynthetic process 3.23% (2/62) 5.17 0.001424 0.031666
GO:0005789 endoplasmic reticulum membrane 11.29% (7/62) 2.05 0.001467 0.032079
GO:0071230 cellular response to amino acid stimulus 3.23% (2/62) 5.13 0.001506 0.032397
GO:0000323 lytic vacuole 6.45% (4/62) 3.01 0.001562 0.033044
GO:0044238 primary metabolic process 50.0% (31/62) 0.65 0.002238 0.035373
GO:0009501 amyloplast 3.23% (2/62) 4.81 0.002345 0.036632
GO:0030247 polysaccharide binding 3.23% (2/62) 4.78 0.002449 0.037368
GO:0005354 galactose transmembrane transporter activity 3.23% (2/62) 4.78 0.002449 0.037368
GO:0016051 carbohydrate biosynthetic process 8.06% (5/62) 2.41 0.002528 0.03769
GO:0015075 ion transmembrane transporter activity 11.29% (7/62) 1.91 0.002516 0.037947
GO:0005261 cation channel activity 4.84% (3/62) 3.47 0.002575 0.037953
GO:0072524 pyridine-containing compound metabolic process 4.84% (3/62) 3.46 0.002617 0.038154
GO:0071704 organic substance metabolic process 54.84% (34/62) 0.57 0.00318 0.040123
GO:0110165 cellular anatomical entity 77.42% (48/62) 0.36 0.003172 0.040399
GO:0033882 choloyl-CoA hydrolase activity 1.61% (1/62) 8.3 0.00317 0.040773
GO:0009852 auxin catabolic process 1.61% (1/62) 8.3 0.00317 0.040773
GO:0047776 citramalate lyase activity 1.61% (1/62) 8.3 0.00317 0.040773
GO:1901848 nicotinate catabolic process 1.61% (1/62) 8.3 0.00317 0.040773
GO:0099078 BORC complex 1.61% (1/62) 8.3 0.00317 0.040773
GO:0015318 inorganic molecular entity transmembrane transporter activity 9.68% (6/62) 2.06 0.003129 0.042764
GO:0005976 polysaccharide metabolic process 9.68% (6/62) 2.06 0.003163 0.042783
GO:0043628 small regulatory ncRNA 3'-end processing 3.23% (2/62) 4.6 0.003119 0.043075
GO:0005351 carbohydrate:proton symporter activity 3.23% (2/62) 4.6 0.003119 0.043075
GO:0005402 carbohydrate:cation symporter activity 3.23% (2/62) 4.6 0.003119 0.043075
GO:0015980 energy derivation by oxidation of organic compounds 4.84% (3/62) 3.32 0.003463 0.043274
GO:0005496 steroid binding 3.23% (2/62) 4.63 0.003002 0.043283
GO:0042304 regulation of fatty acid biosynthetic process 4.84% (3/62) 3.37 0.003117 0.04445
GO:0005488 binding 67.74% (42/62) 0.44 0.00366 0.045302
GO:0005355 glucose transmembrane transporter activity 3.23% (2/62) 4.47 0.003735 0.045798
GO:0055085 transmembrane transport 12.9% (8/62) 1.65 0.003814 0.046336
GO:0015770 sucrose transport 3.23% (2/62) 4.44 0.003864 0.046516
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_224 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_255 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_258 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_44 0.009 Orthogroups with 8 Potato genotypes Compare
Sequences (62) (download table)



InterPro Domains



GO Terms



Family Terms