Coexpression cluster: Cluster_259 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006950 response to stress 63.33% (38/60) 1.18 0.0 1.9e-05
GO:0016020 membrane 60.0% (36/60) 1.09 0.0 5.9e-05
GO:0050896 response to stimulus 71.67% (43/60) 0.89 0.0 6e-05
GO:0044419 biological process involved in interspecies interaction between organisms 43.33% (26/60) 1.49 0.0 6.8e-05
GO:0043207 response to external biotic stimulus 43.33% (26/60) 1.43 0.0 7.7e-05
GO:0012501 programmed cell death 16.67% (10/60) 2.99 0.0 7.7e-05
GO:0008219 cell death 18.33% (11/60) 2.9 0.0 8.4e-05
GO:0009987 cellular process 83.33% (50/60) 0.67 0.0 8.7e-05
GO:1901700 response to oxygen-containing compound 45.0% (27/60) 1.46 0.0 8.9e-05
GO:0009605 response to external stimulus 48.33% (29/60) 1.28 1e-06 9.4e-05
GO:0051707 response to other organism 43.33% (26/60) 1.53 0.0 9.6e-05
GO:0009607 response to biotic stimulus 43.33% (26/60) 1.41 1e-06 9.7e-05
GO:0098542 defense response to other organism 35.0% (21/60) 1.65 1e-06 0.000113
GO:0006952 defense response 38.33% (23/60) 1.51 1e-06 0.000135
GO:0009751 response to salicylic acid 16.67% (10/60) 2.83 1e-06 0.000137
GO:0042221 response to chemical 53.33% (32/60) 1.13 1e-06 0.00014
GO:0010033 response to organic substance 45.0% (27/60) 1.31 2e-06 0.000143
GO:0004672 protein kinase activity 21.67% (13/60) 2.24 3e-06 0.000216
GO:0003674 molecular_function 86.67% (52/60) 0.54 5e-06 0.000421
GO:0016310 phosphorylation 21.67% (13/60) 2.14 6e-06 0.000439
GO:0016773 phosphotransferase activity, alcohol group as acceptor 21.67% (13/60) 2.12 7e-06 0.000478
GO:0110165 cellular anatomical entity 86.67% (52/60) 0.53 7e-06 0.000484
GO:0009737 response to abscisic acid 20.0% (12/60) 2.21 9e-06 0.000576
GO:0016772 transferase activity, transferring phosphorus-containing groups 23.33% (14/60) 1.96 9e-06 0.000589
GO:0033993 response to lipid 28.33% (17/60) 1.68 1.1e-05 0.000691
GO:0005575 cellular_component 86.67% (52/60) 0.51 1.2e-05 0.000726
GO:0016301 kinase activity 21.67% (13/60) 2.0 1.6e-05 0.000887
GO:0008150 biological_process 86.67% (52/60) 0.49 1.7e-05 0.000939
GO:0005515 protein binding 65.0% (39/60) 0.78 1.9e-05 0.000993
GO:0005488 binding 76.67% (46/60) 0.61 2.2e-05 0.001117
GO:0006468 protein phosphorylation 18.33% (11/60) 2.19 2.4e-05 0.001186
GO:0005886 plasma membrane 35.0% (21/60) 1.36 2.5e-05 0.001189
GO:0097305 response to alcohol 20.0% (12/60) 2.03 2.8e-05 0.001302
GO:0048469 cell maturation 6.67% (4/60) 4.42 3.8e-05 0.001694
GO:0004674 protein serine/threonine kinase activity 16.67% (10/60) 2.27 3.7e-05 0.001699
GO:0014070 response to organic cyclic compound 20.0% (12/60) 1.96 4.5e-05 0.001944
GO:1902584 positive regulation of response to water deprivation 6.67% (4/60) 4.27 5.7e-05 0.002379
GO:0019199 transmembrane receptor protein kinase activity 8.33% (5/60) 3.57 6.5e-05 0.002637
GO:0010311 lateral root formation 8.33% (5/60) 3.42 0.000106 0.004187
GO:0032502 developmental process 50.0% (30/60) 0.89 0.000125 0.00482
GO:0009628 response to abiotic stimulus 40.0% (24/60) 1.06 0.000151 0.005673
GO:0038023 signaling receptor activity 11.67% (7/60) 2.58 0.000167 0.005835
GO:0045087 innate immune response 13.33% (8/60) 2.35 0.000166 0.005966
GO:0010035 response to inorganic substance 26.67% (16/60) 1.44 0.000163 0.005969
GO:0047372 acylglycerol lipase activity 5.0% (3/60) 4.78 0.000182 0.006248
GO:1905393 plant organ formation 10.0% (6/60) 2.84 0.000189 0.006335
GO:0080134 regulation of response to stress 23.33% (14/60) 1.55 0.000205 0.006727
GO:0060089 molecular transducer activity 11.67% (7/60) 2.5 0.000227 0.007301
GO:0004888 transmembrane signaling receptor activity 8.33% (5/60) 3.15 0.000254 0.007824
GO:0005773 vacuole 16.67% (10/60) 1.93 0.000253 0.007962
GO:0031408 oxylipin biosynthetic process 5.0% (3/60) 4.57 0.000279 0.00844
GO:0021700 developmental maturation 10.0% (6/60) 2.73 0.000292 0.008486
GO:0006955 immune response 13.33% (8/60) 2.23 0.00029 0.008604
GO:0031407 oxylipin metabolic process 5.0% (3/60) 4.52 0.000311 0.008861
GO:0065008 regulation of biological quality 28.33% (17/60) 1.3 0.000322 0.009026
GO:0009791 post-embryonic development 18.33% (11/60) 1.76 0.000344 0.009479
GO:0006796 phosphate-containing compound metabolic process 23.33% (14/60) 1.47 0.000378 0.010224
GO:1902890 regulation of root hair elongation 3.33% (2/60) 6.1 0.00039 0.010351
GO:0048584 positive regulation of response to stimulus 20.0% (12/60) 1.62 0.000412 0.010757
GO:0006793 phosphorus metabolic process 23.33% (14/60) 1.44 0.00045 0.011559
GO:0043231 intracellular membrane-bounded organelle 56.67% (34/60) 0.7 0.00046 0.011625
GO:0002229 defense response to oomycetes 6.67% (4/60) 3.41 0.000566 0.014072
GO:0043227 membrane-bounded organelle 56.67% (34/60) 0.68 0.00058 0.014186
GO:0048653 anther development 6.67% (4/60) 3.38 0.000601 0.014481
GO:0032101 regulation of response to external stimulus 16.67% (10/60) 1.76 0.000633 0.014787
GO:0002239 response to oomycetes 8.33% (5/60) 2.86 0.000629 0.014916
GO:0048583 regulation of response to stimulus 30.0% (18/60) 1.15 0.000719 0.016526
GO:0071695 anatomical structure maturation 8.33% (5/60) 2.78 0.000818 0.018537
GO:0031347 regulation of defense response 16.67% (10/60) 1.69 0.000932 0.019948
GO:0009626 plant-type hypersensitive response 8.33% (5/60) 2.74 0.000914 0.020127
GO:0034050 programmed cell death induced by symbiont 8.33% (5/60) 2.74 0.000914 0.020127
GO:0140096 catalytic activity, acting on a protein 25.0% (15/60) 1.27 0.000928 0.020149
GO:0002831 regulation of response to biotic stimulus 15.0% (9/60) 1.81 0.000976 0.020606
GO:0090398 cellular senescence 3.33% (2/60) 5.39 0.001047 0.021802
GO:1902265 abscisic acid homeostasis 3.33% (2/60) 5.3 0.001186 0.02344
GO:0032535 regulation of cellular component size 6.67% (4/60) 3.12 0.001183 0.023672
GO:0009617 response to bacterium 18.33% (11/60) 1.54 0.001176 0.023844
GO:0009615 response to virus 8.33% (5/60) 2.66 0.001162 0.023867
GO:0009888 tissue development 13.33% (8/60) 1.9 0.001288 0.024495
GO:0065007 biological regulation 56.67% (34/60) 0.63 0.001278 0.024615
GO:0032501 multicellular organismal process 35.0% (21/60) 0.96 0.001265 0.024667
GO:0043229 intracellular organelle 60.0% (36/60) 0.59 0.001324 0.024873
GO:0042592 homeostatic process 16.67% (10/60) 1.61 0.001451 0.026947
GO:0043226 organelle 60.0% (36/60) 0.58 0.001492 0.027375
GO:0048250 iron import into the mitochondrion 1.67% (1/60) 9.35 0.001535 0.027829
GO:0002376 immune system process 15.0% (9/60) 1.7 0.001679 0.029073
GO:0051702 biological process involved in interaction with symbiont 8.33% (5/60) 2.54 0.001706 0.029212
GO:2000070 regulation of response to water deprivation 6.67% (4/60) 2.98 0.001677 0.029363
GO:0090066 regulation of anatomical structure size 6.67% (4/60) 2.99 0.001658 0.029374
GO:0031155 regulation of reproductive fruiting body development 3.33% (2/60) 5.06 0.001655 0.02966
GO:0010075 regulation of meristem growth 6.67% (4/60) 2.96 0.001752 0.029669
GO:0071456 cellular response to hypoxia 6.67% (4/60) 2.96 0.00179 0.029991
GO:0004620 phospholipase activity 5.0% (3/60) 3.64 0.001839 0.030477
GO:0036294 cellular response to decreased oxygen levels 6.67% (4/60) 2.92 0.00195 0.031971
GO:0075260 regulation of spore-bearing organ development 3.33% (2/60) 4.92 0.002009 0.032592
GO:0048878 chemical homeostasis 15.0% (9/60) 1.65 0.002105 0.033794
GO:1900057 positive regulation of leaf senescence 5.0% (3/60) 3.54 0.00223 0.035422
GO:0008361 regulation of cell size 5.0% (3/60) 3.52 0.002306 0.036257
GO:0044403 biological process involved in symbiotic interaction 10.0% (6/60) 2.14 0.002359 0.036717
GO:0009992 cellular water homeostasis 3.33% (2/60) 4.76 0.002498 0.038106
GO:0002833 positive regulation of response to biotic stimulus 10.0% (6/60) 2.12 0.002536 0.03831
GO:0016740 transferase activity 30.0% (18/60) 0.99 0.002493 0.038418
GO:0071453 cellular response to oxygen levels 6.67% (4/60) 2.8 0.002663 0.039454
GO:1901564 organonitrogen compound metabolic process 38.33% (23/60) 0.82 0.002654 0.039701
GO:0080142 regulation of salicylic acid biosynthetic process 3.33% (2/60) 4.7 0.002707 0.039728
GO:0006979 response to oxidative stress 13.33% (8/60) 1.72 0.002744 0.039888
GO:0051282 regulation of sequestering of calcium ion 3.33% (2/60) 4.68 0.002815 0.040537
GO:0031349 positive regulation of defense response 10.0% (6/60) 2.08 0.002873 0.040994
GO:0048507 meristem development 5.0% (3/60) 3.39 0.002973 0.042026
GO:1905815 regulation of dorsal/ventral axon guidance 1.67% (1/60) 8.35 0.003068 0.042208
GO:0015970 guanosine tetraphosphate biosynthetic process 1.67% (1/60) 8.35 0.003068 0.042208
GO:0034256 chlorophyll(ide) b reductase activity 1.67% (1/60) 8.35 0.003068 0.042208
GO:0055081 anion homeostasis 5.0% (3/60) 3.36 0.003156 0.043038
GO:0003006 developmental process involved in reproduction 28.33% (17/60) 1.0 0.003351 0.045304
GO:0004383 guanylate cyclase activity 3.33% (2/60) 4.51 0.003503 0.04653
GO:0010038 response to metal ion 13.33% (8/60) 1.67 0.003497 0.046854
GO:0006968 cellular defense response 3.33% (2/60) 4.46 0.003748 0.048941
GO:0006884 cell volume homeostasis 3.33% (2/60) 4.46 0.003748 0.048941
GO:1901002 positive regulation of response to salt stress 5.0% (3/60) 3.26 0.003852 0.049877
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_79 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_86 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_91 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_99 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_138 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_160 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_201 0.024 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_208 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_239 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_242 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (60) (download table)

InterPro Domains

GO Terms

Family Terms