Coexpression cluster: Cluster_208 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901528 hydrogen peroxide mediated signaling pathway involved in stomatal movement 6.25% (4/64) 6.8 0.0 4.9e-05
GO:0009607 response to biotic stimulus 43.75% (28/64) 1.42 0.0 5.4e-05
GO:0004675 transmembrane receptor protein serine/threonine kinase activity 9.38% (6/64) 4.59 0.0 6.8e-05
GO:0043207 response to external biotic stimulus 43.75% (28/64) 1.45 0.0 7.5e-05
GO:0071588 hydrogen peroxide mediated signaling pathway 6.25% (4/64) 5.93 1e-06 0.00012
GO:0098542 defense response to other organism 34.38% (22/64) 1.63 1e-06 0.000132
GO:0009605 response to external stimulus 46.88% (30/64) 1.23 1e-06 0.000163
GO:0006952 defense response 37.5% (24/64) 1.47 1e-06 0.000174
GO:0009808 lignin metabolic process 10.94% (7/64) 3.64 1e-06 0.000175
GO:0050832 defense response to fungus 18.75% (12/64) 2.35 3e-06 0.000347
GO:0009555 pollen development 14.06% (9/64) 2.78 6e-06 0.000532
GO:0035017 cuticle pattern formation 6.25% (4/64) 5.04 7e-06 0.000558
GO:0019199 transmembrane receptor protein kinase activity 9.38% (6/64) 3.74 6e-06 0.000572
GO:0051707 response to other organism 37.5% (24/64) 1.33 8e-06 0.000616
GO:0120251 hydrocarbon biosynthetic process 12.5% (8/64) 2.92 1e-05 0.000724
GO:0044419 biological process involved in interspecies interaction between organisms 37.5% (24/64) 1.28 1.3e-05 0.000785
GO:0009800 cinnamic acid biosynthetic process 6.25% (4/64) 4.76 1.5e-05 0.000789
GO:1901957 regulation of cutin biosynthetic process 6.25% (4/64) 4.76 1.5e-05 0.000789
GO:0009698 phenylpropanoid metabolic process 15.62% (10/64) 2.46 1.2e-05 0.000798
GO:0042304 regulation of fatty acid biosynthetic process 7.81% (5/64) 4.06 1.3e-05 0.000802
GO:0120252 hydrocarbon metabolic process 12.5% (8/64) 2.83 1.6e-05 0.000806
GO:0010345 suberin biosynthetic process 7.81% (5/64) 3.89 2.3e-05 0.001096
GO:0045723 positive regulation of fatty acid biosynthetic process 6.25% (4/64) 4.51 3e-05 0.001358
GO:0004888 transmembrane signaling receptor activity 9.38% (6/64) 3.32 3.1e-05 0.001365
GO:0009803 cinnamic acid metabolic process 6.25% (4/64) 4.45 3.6e-05 0.001494
GO:0019217 regulation of fatty acid metabolic process 7.81% (5/64) 3.72 4e-05 0.001574
GO:0009593 detection of chemical stimulus 7.81% (5/64) 3.72 4e-05 0.001574
GO:0006950 response to stress 51.56% (33/64) 0.88 5.7e-05 0.001946
GO:0019748 secondary metabolic process 18.75% (12/64) 1.95 5.2e-05 0.001969
GO:0090333 regulation of stomatal closure 7.81% (5/64) 3.63 5.4e-05 0.001973
GO:0009620 response to fungus 20.31% (13/64) 1.83 5.7e-05 0.001987
GO:0045923 positive regulation of fatty acid metabolic process 6.25% (4/64) 4.22 6.6e-05 0.002086
GO:0048229 gametophyte development 14.06% (9/64) 2.34 6.5e-05 0.002145
GO:0009809 lignin biosynthetic process 7.81% (5/64) 3.48 8.7e-05 0.002697
GO:0050896 response to stimulus 62.5% (40/64) 0.69 0.000101 0.002863
GO:0044550 secondary metabolite biosynthetic process 15.62% (10/64) 2.1 9.9e-05 0.002892
GO:0010119 regulation of stomatal movement 10.94% (7/64) 2.69 0.000106 0.002937
GO:0009409 response to cold 17.19% (11/64) 1.97 9.9e-05 0.002971
GO:0071365 cellular response to auxin stimulus 6.25% (4/64) 3.99 0.000122 0.003301
GO:2000241 regulation of reproductive process 17.19% (11/64) 1.92 0.00013 0.003415
GO:0009699 phenylpropanoid biosynthetic process 12.5% (8/64) 2.36 0.00016 0.004114
GO:0046890 regulation of lipid biosynthetic process 9.38% (6/64) 2.86 0.00018 0.004493
GO:0016135 saponin biosynthetic process 6.25% (4/64) 3.8 0.000204 0.004996
GO:2000652 regulation of secondary cell wall biogenesis 6.25% (4/64) 3.7 0.000263 0.006278
GO:0080091 regulation of raffinose metabolic process 4.69% (3/64) 4.46 0.00035 0.008182
GO:0016134 saponin metabolic process 6.25% (4/64) 3.51 0.000429 0.009597
GO:0010565 regulation of cellular ketone metabolic process 9.38% (6/64) 2.63 0.000423 0.009661
GO:0042537 benzene-containing compound metabolic process 7.81% (5/64) 2.97 0.000448 0.009811
GO:0046394 carboxylic acid biosynthetic process 12.5% (8/64) 2.11 0.000508 0.010681
GO:0010091 trichome branching 6.25% (4/64) 3.45 0.000501 0.010748
GO:0009741 response to brassinosteroid 7.81% (5/64) 2.91 0.000544 0.010784
GO:0042221 response to chemical 43.75% (28/64) 0.84 0.000536 0.010831
GO:0010033 response to organic substance 35.94% (23/64) 0.98 0.000574 0.010967
GO:0080092 regulation of pollen tube growth 6.25% (4/64) 3.43 0.000536 0.011039
GO:0120255 olefinic compound biosynthetic process 6.25% (4/64) 3.4 0.000572 0.011131
GO:1901332 negative regulation of lateral root development 4.69% (3/64) 4.18 0.000622 0.011677
GO:0035987 endodermal cell differentiation 3.12% (2/64) 5.73 0.000653 0.012041
GO:0016138 glycoside biosynthetic process 6.25% (4/64) 3.34 0.00068 0.012331
GO:1903338 regulation of cell wall organization or biogenesis 6.25% (4/64) 3.31 0.000723 0.012463
GO:0003824 catalytic activity 53.12% (34/64) 0.69 0.000702 0.012502
GO:0019216 regulation of lipid metabolic process 9.38% (6/64) 2.48 0.000717 0.012564
GO:0003002 regionalization 10.94% (7/64) 2.19 0.000832 0.014109
GO:0046889 positive regulation of lipid biosynthetic process 6.25% (4/64) 3.22 0.000914 0.015012
GO:0072330 monocarboxylic acid biosynthetic process 9.38% (6/64) 2.4 0.000945 0.015054
GO:0046246 terpene biosynthetic process 7.81% (5/64) 2.74 0.000934 0.015096
GO:0016053 organic acid biosynthetic process 12.5% (8/64) 1.97 0.000968 0.015184
GO:0048511 rhythmic process 9.38% (6/64) 2.42 0.000911 0.015193
GO:0006723 cuticle hydrocarbon biosynthetic process 4.69% (3/64) 3.94 0.001001 0.015473
GO:0090506 axillary shoot meristem initiation 3.12% (2/64) 5.4 0.001041 0.015861
GO:0010769 regulation of cell morphogenesis involved in differentiation 6.25% (4/64) 3.13 0.001153 0.017312
GO:0062013 positive regulation of small molecule metabolic process 6.25% (4/64) 3.1 0.001231 0.017967
GO:0009628 response to abiotic stimulus 35.94% (23/64) 0.91 0.001217 0.018022
GO:0016324 apical plasma membrane 6.25% (4/64) 3.07 0.001346 0.018613
GO:0045834 positive regulation of lipid metabolic process 6.25% (4/64) 3.08 0.001296 0.018655
GO:0042214 terpene metabolic process 7.81% (5/64) 2.63 0.001317 0.018702
GO:0051606 detection of stimulus 7.81% (5/64) 2.62 0.00134 0.018783
GO:0043621 protein self-association 7.81% (5/64) 2.61 0.001388 0.018951
GO:0003674 molecular_function 78.12% (50/64) 0.39 0.001488 0.020047
GO:0046777 protein autophosphorylation 10.94% (7/64) 2.03 0.001571 0.020637
GO:0038023 signaling receptor activity 9.38% (6/64) 2.26 0.001566 0.020836
GO:0004674 protein serine/threonine kinase activity 12.5% (8/64) 1.85 0.001608 0.02087
GO:0110165 cellular anatomical entity 78.12% (50/64) 0.38 0.001842 0.023615
GO:0060089 molecular transducer activity 9.38% (6/64) 2.19 0.002024 0.025632
GO:0016740 transferase activity 29.69% (19/64) 0.98 0.002193 0.026805
GO:1900111 positive regulation of histone H3-K9 dimethylation 3.12% (2/64) 4.86 0.002178 0.026933
GO:2000023 regulation of lateral root development 4.69% (3/64) 3.55 0.002174 0.027195
GO:0009791 post-embryonic development 15.62% (10/64) 1.52 0.002257 0.027271
GO:1901700 response to oxygen-containing compound 31.25% (20/64) 0.94 0.002288 0.027322
GO:0004672 protein kinase activity 14.06% (9/64) 1.62 0.002434 0.02781
GO:0010200 response to chitin 9.38% (6/64) 2.14 0.00243 0.02806
GO:0140426 PAMP-triggered immunity signalling pathway 3.12% (2/64) 4.8 0.002388 0.028203
GO:0009266 response to temperature stimulus 17.19% (11/64) 1.42 0.002417 0.02822
GO:1900109 regulation of histone H3-K9 dimethylation 3.12% (2/64) 4.73 0.002607 0.029467
GO:0006629 lipid metabolic process 18.75% (12/64) 1.32 0.002672 0.029875
GO:0062012 regulation of small molecule metabolic process 9.38% (6/64) 2.1 0.002732 0.030225
GO:0005618 cell wall 14.06% (9/64) 1.59 0.002855 0.030306
GO:0009647 skotomorphogenesis 3.12% (2/64) 4.67 0.002836 0.030412
GO:0005575 cellular_component 78.12% (50/64) 0.36 0.002822 0.030581
GO:0016137 glycoside metabolic process 6.25% (4/64) 2.78 0.002796 0.030613
GO:0071704 organic substance metabolic process 54.69% (35/64) 0.56 0.002963 0.031143
GO:0009820 alkaloid metabolic process 7.81% (5/64) 2.35 0.003033 0.031565
GO:0032501 multicellular organismal process 32.81% (21/64) 0.87 0.00313 0.032256
GO:0090359 negative regulation of abscisic acid biosynthetic process 1.56% (1/64) 8.25 0.003272 0.033387
GO:0010726 positive regulation of hydrogen peroxide metabolic process 3.12% (2/64) 4.55 0.00332 0.033546
GO:0120254 olefinic compound metabolic process 6.25% (4/64) 2.7 0.003399 0.034024
GO:0032787 monocarboxylic acid metabolic process 12.5% (8/64) 1.66 0.003715 0.035172
GO:0019752 carboxylic acid metabolic process 15.62% (10/64) 1.43 0.003622 0.035245
GO:0009825 multidimensional cell growth 4.69% (3/64) 3.3 0.003569 0.03539
GO:0003680 minor groove of adenine-thymine-rich DNA binding 3.12% (2/64) 4.47 0.003706 0.035408
GO:0010529 negative regulation of transposition 3.12% (2/64) 4.47 0.003706 0.035408
GO:0007623 circadian rhythm 7.81% (5/64) 2.29 0.003609 0.035446
GO:0043680 filiform apparatus 3.12% (2/64) 4.42 0.003974 0.036323
GO:0048439 flower morphogenesis 3.12% (2/64) 4.42 0.003974 0.036323
GO:0006468 protein phosphorylation 12.5% (8/64) 1.64 0.004012 0.036354
GO:1900425 negative regulation of defense response to bacterium 4.69% (3/64) 3.25 0.003901 0.036605
GO:2000069 regulation of post-embryonic root development 4.69% (3/64) 3.25 0.003958 0.036811
GO:0030312 external encapsulating structure 14.06% (9/64) 1.5 0.004154 0.037
GO:0000902 cell morphogenesis 12.5% (8/64) 1.63 0.004137 0.037159
GO:0020037 heme binding 6.25% (4/64) 2.59 0.004461 0.037509
GO:0048440 carpel development 3.12% (2/64) 4.37 0.004252 0.037553
GO:0044283 small molecule biosynthetic process 12.5% (8/64) 1.61 0.004527 0.037762
GO:0008299 isoprenoid biosynthetic process 9.38% (6/64) 1.96 0.004456 0.037766
GO:0002832 negative regulation of response to biotic stimulus 6.25% (4/64) 2.59 0.004422 0.037789
GO:0051510 regulation of unidimensional cell growth 6.25% (4/64) 2.58 0.004578 0.037888
GO:0003682 chromatin binding 7.81% (5/64) 2.22 0.004398 0.037888
GO:0016773 phosphotransferase activity, alcohol group as acceptor 14.06% (9/64) 1.5 0.004339 0.038006
GO:0035067 negative regulation of histone acetylation 3.12% (2/64) 4.35 0.004394 0.038165
GO:0048856 anatomical structure development 34.38% (22/64) 0.78 0.004896 0.040204
GO:0140096 catalytic activity, acting on a protein 21.88% (14/64) 1.08 0.005103 0.041577
GO:0007389 pattern specification process 10.94% (7/64) 1.72 0.005174 0.041834
GO:0010528 regulation of transposition 3.12% (2/64) 4.21 0.005291 0.042131
GO:2000757 negative regulation of peptidyl-lysine acetylation 3.12% (2/64) 4.21 0.005291 0.042131
GO:0004601 peroxidase activity 4.69% (3/64) 3.08 0.005481 0.04267
GO:0008152 metabolic process 56.25% (36/64) 0.5 0.005454 0.042778
GO:0004683 calmodulin-dependent protein kinase activity 3.12% (2/64) 4.19 0.005448 0.043055
GO:2000067 regulation of root morphogenesis 3.12% (2/64) 4.17 0.005608 0.043336
GO:0047372 acylglycerol lipase activity 3.12% (2/64) 4.1 0.006098 0.045134
GO:0070417 cellular response to cold 4.69% (3/64) 3.03 0.006057 0.045145
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor 4.69% (3/64) 3.03 0.006057 0.045145
GO:0044249 cellular biosynthetic process 26.56% (17/64) 0.92 0.005945 0.045279
GO:0009737 response to abscisic acid 12.5% (8/64) 1.53 0.006295 0.045312
GO:0032502 developmental process 42.19% (27/64) 0.64 0.00617 0.045346
GO:0032102 negative regulation of response to external stimulus 6.25% (4/64) 2.47 0.006006 0.045415
GO:0071272 morphine metabolic process 3.12% (2/64) 4.08 0.006266 0.045415
GO:0097295 morphine biosynthetic process 3.12% (2/64) 4.08 0.006266 0.045415
GO:0051574 positive regulation of histone H3-K9 methylation 3.12% (2/64) 4.13 0.005932 0.045511
GO:0005773 vacuole 12.5% (8/64) 1.52 0.006582 0.047057
GO:0099402 plant organ development 14.06% (9/64) 1.39 0.006796 0.047614
GO:0010483 pollen tube reception 3.12% (2/64) 4.01 0.006957 0.04779
GO:1901376 organic heteropentacyclic compound metabolic process 3.12% (2/64) 4.01 0.006957 0.04779
GO:1901378 organic heteropentacyclic compound biosynthetic process 3.12% (2/64) 4.01 0.006957 0.04779
GO:1901984 negative regulation of protein acetylation 3.12% (2/64) 4.03 0.006781 0.047832
GO:0009785 blue light signaling pathway 3.12% (2/64) 4.03 0.006781 0.047832
GO:1901659 glycosyl compound biosynthetic process 6.25% (4/64) 2.4 0.007107 0.048506
GO:0045229 external encapsulating structure organization 10.94% (7/64) 1.63 0.007226 0.048998
GO:0071482 cellular response to light stimulus 6.25% (4/64) 2.38 0.007321 0.049009
GO:0016301 kinase activity 14.06% (9/64) 1.38 0.007303 0.049205
GO:0045730 respiratory burst 3.12% (2/64) 3.95 0.007497 0.049872
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_216 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_249 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_259 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_1 0.015 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_2 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_24 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_26 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_52 0.024 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_89 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_93 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_102 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_129 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_132 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_133 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_163 0.01 Orthogroups with 8 Potato genotypes Compare
Sequences (64) (download table)

InterPro Domains

GO Terms

Family Terms