Coexpression cluster: Cluster_242 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 89.89% (80/89) 0.59 0.0 0.0
GO:0003824 catalytic activity 65.17% (58/89) 0.98 0.0 0.0
GO:0050896 response to stimulus 67.42% (60/89) 0.8 0.0 2e-05
GO:0006629 lipid metabolic process 25.84% (23/89) 1.78 0.0 4.5e-05
GO:0110165 cellular anatomical entity 85.39% (76/89) 0.51 0.0 6e-05
GO:0005488 binding 76.4% (68/89) 0.61 0.0 7.8e-05
GO:0005575 cellular_component 85.39% (76/89) 0.48 0.0 9.6e-05
GO:0008150 biological_process 85.39% (76/89) 0.47 1e-06 0.000119
GO:0016134 saponin metabolic process 7.87% (7/89) 3.84 1e-06 0.000119
GO:0043207 response to external biotic stimulus 37.08% (33/89) 1.21 1e-06 0.000185
GO:0005997 xylulose metabolic process 3.37% (3/89) 6.9 2e-06 0.000235
GO:0009607 response to biotic stimulus 37.08% (33/89) 1.19 2e-06 0.000246
GO:0008152 metabolic process 64.04% (57/89) 0.69 3e-06 0.000329
GO:0009628 response to abiotic stimulus 40.45% (36/89) 1.08 3e-06 0.000329
GO:0044237 cellular metabolic process 57.3% (51/89) 0.76 5e-06 0.00051
GO:0044255 cellular lipid metabolic process 20.22% (18/89) 1.72 7e-06 0.000606
GO:0098754 detoxification 8.99% (8/89) 3.03 7e-06 0.000629
GO:0046527 glucosyltransferase activity 8.99% (8/89) 2.96 9e-06 0.000764
GO:0008194 UDP-glycosyltransferase activity 10.11% (9/89) 2.64 1.5e-05 0.001206
GO:0016137 glycoside metabolic process 7.87% (7/89) 3.11 1.8e-05 0.001286
GO:0009605 response to external stimulus 39.33% (35/89) 0.98 2e-05 0.001302
GO:0016491 oxidoreductase activity 20.22% (18/89) 1.6 2.1e-05 0.00134
GO:0010224 response to UV-B 7.87% (7/89) 3.09 1.9e-05 0.001342
GO:0016020 membrane 49.44% (44/89) 0.81 1.8e-05 0.001345
GO:0005794 Golgi apparatus 14.61% (13/89) 1.97 2.5e-05 0.001514
GO:0016740 transferase activity 32.58% (29/89) 1.11 2.7e-05 0.001598
GO:0035251 UDP-glucosyltransferase activity 7.87% (7/89) 2.98 3.1e-05 0.00176
GO:0006950 response to stress 48.31% (43/89) 0.79 3.7e-05 0.002009
GO:0016758 hexosyltransferase activity 10.11% (9/89) 2.46 4e-05 0.00201
GO:0016757 glycosyltransferase activity 11.24% (10/89) 2.29 3.9e-05 0.002054
GO:0010351 lithium ion transport 2.25% (2/89) 7.46 5.1e-05 0.002277
GO:0010352 lithium ion export across the plasma membrane 2.25% (2/89) 7.46 5.1e-05 0.002277
GO:0090452 lithium ion transmembrane transport 2.25% (2/89) 7.46 5.1e-05 0.002277
GO:0009987 cellular process 73.03% (65/89) 0.48 4.7e-05 0.002301
GO:0016135 saponin biosynthetic process 5.62% (5/89) 3.64 5.3e-05 0.002316
GO:0006979 response to oxidative stress 14.61% (13/89) 1.86 5.8e-05 0.002322
GO:0009058 biosynthetic process 32.58% (29/89) 1.05 5.8e-05 0.002362
GO:0044249 cellular biosynthetic process 30.34% (27/89) 1.11 5.7e-05 0.002397
GO:0098869 cellular oxidant detoxification 5.62% (5/89) 3.58 6.4e-05 0.002438
GO:0008610 lipid biosynthetic process 15.73% (14/89) 1.75 6.4e-05 0.002494
GO:1990538 xylan O-acetyltransferase activity 3.37% (3/89) 5.15 8.4e-05 0.003101
GO:0046246 terpene biosynthetic process 7.87% (7/89) 2.75 8.7e-05 0.003153
GO:0043227 membrane-bounded organelle 55.06% (49/89) 0.64 0.000108 0.003706
GO:0102682 N6-(Delta2-isopentenyl)-adenosine 5'-monophosphate phosphoribohydrolase activity 2.25% (2/89) 6.97 0.000107 0.00377
GO:0042221 response to chemical 42.7% (38/89) 0.81 0.000113 0.003815
GO:0010035 response to inorganic substance 23.6% (21/89) 1.26 0.000116 0.003837
GO:0009409 response to cold 14.61% (13/89) 1.73 0.000135 0.004372
GO:0042214 terpene metabolic process 7.87% (7/89) 2.63 0.000141 0.004456
GO:0006814 sodium ion transport 3.37% (3/89) 4.78 0.000183 0.005451
GO:0043231 intracellular membrane-bounded organelle 53.93% (48/89) 0.63 0.000181 0.005482
GO:0071704 organic substance metabolic process 56.18% (50/89) 0.6 0.00018 0.005568
GO:0015385 sodium:proton antiporter activity 2.25% (2/89) 6.46 0.000228 0.00665
GO:0016138 glycoside biosynthetic process 5.62% (5/89) 3.18 0.000237 0.006791
GO:0019321 pentose metabolic process 3.37% (3/89) 4.64 0.000246 0.006915
GO:0005975 carbohydrate metabolic process 13.48% (12/89) 1.73 0.000251 0.006916
GO:1990748 cellular detoxification 5.62% (5/89) 3.16 0.000256 0.006931
GO:0098719 sodium ion import across plasma membrane 2.25% (2/89) 6.32 0.000278 0.007404
GO:0009651 response to salt stress 14.61% (13/89) 1.62 0.000294 0.007684
GO:0034637 cellular carbohydrate biosynthetic process 6.74% (6/89) 2.71 0.000327 0.008411
GO:0016209 antioxidant activity 5.62% (5/89) 3.06 0.000348 0.00879
GO:1901576 organic substance biosynthetic process 29.21% (26/89) 0.97 0.0004 0.009949
GO:0051707 response to other organism 29.21% (26/89) 0.97 0.00044 0.010588
GO:0016128 phytosteroid metabolic process 4.49% (4/89) 3.51 0.000436 0.010671
GO:0009941 chloroplast envelope 8.99% (8/89) 2.14 0.00048 0.011387
GO:0140828 metal cation:monoatomic cation antiporter activity 3.37% (3/89) 4.28 0.000514 0.011991
GO:0009266 response to temperature stimulus 16.85% (15/89) 1.39 0.000535 0.012108
GO:0005929 cilium 4.49% (4/89) 3.44 0.000528 0.012131
GO:0006970 response to osmotic stress 15.73% (14/89) 1.45 0.000565 0.012604
GO:0080043 quercetin 3-O-glucosyltransferase activity 4.49% (4/89) 3.4 0.000578 0.012716
GO:0120251 hydrocarbon biosynthetic process 7.87% (7/89) 2.25 0.000691 0.014157
GO:0044419 biological process involved in interspecies interaction between organisms 29.21% (26/89) 0.92 0.000684 0.014224
GO:0006813 potassium ion transport 4.49% (4/89) 3.33 0.000705 0.014254
GO:0015081 sodium ion transmembrane transporter activity 3.37% (3/89) 4.13 0.000684 0.014419
GO:0009526 plastid envelope 8.99% (8/89) 2.06 0.000682 0.014571
GO:0005886 plasma membrane 26.97% (24/89) 0.98 0.000675 0.014622
GO:0035725 sodium ion transmembrane transport 2.25% (2/89) 5.61 0.000766 0.015288
GO:0045489 pectin biosynthetic process 4.49% (4/89) 3.29 0.000783 0.015421
GO:0009827 plant-type cell wall modification 5.62% (5/89) 2.77 0.000855 0.016426
GO:0002238 response to molecule of fungal origin 6.74% (6/89) 2.44 0.000853 0.016597
GO:0070592 cell wall polysaccharide biosynthetic process 4.49% (4/89) 3.22 0.000938 0.017792
GO:0120252 hydrocarbon metabolic process 7.87% (7/89) 2.16 0.000988 0.018065
GO:0031967 organelle envelope 10.11% (9/89) 1.83 0.000981 0.018151
GO:0031975 envelope 10.11% (9/89) 1.83 0.000981 0.018151
GO:1901657 glycosyl compound metabolic process 8.99% (8/89) 1.97 0.001025 0.018288
GO:0009411 response to UV 7.87% (7/89) 2.16 0.001014 0.018305
GO:0098659 inorganic cation import across plasma membrane 3.37% (3/89) 3.89 0.001125 0.019842
GO:0044038 cell wall macromolecule biosynthetic process 4.49% (4/89) 3.13 0.001178 0.020306
GO:0070589 cellular component macromolecule biosynthetic process 4.49% (4/89) 3.13 0.001178 0.020306
GO:0009056 catabolic process 19.1% (17/89) 1.17 0.001242 0.021175
GO:0002215 defense response to nematode 3.37% (3/89) 3.81 0.001317 0.022196
GO:0009506 plasmodesma 17.98% (16/89) 1.2 0.001355 0.022592
GO:0008299 isoprenoid biosynthetic process 8.99% (8/89) 1.9 0.001417 0.023358
GO:0004601 peroxidase activity 4.49% (4/89) 3.02 0.00156 0.025179
GO:0030004 cellular monovalent inorganic cation homeostasis 4.49% (4/89) 3.02 0.00156 0.025179
GO:0099587 inorganic ion import across plasma membrane 3.37% (3/89) 3.71 0.001619 0.025576
GO:0009044 xylan 1,4-beta-xylosidase activity 2.25% (2/89) 5.08 0.001608 0.025674
GO:1900367 positive regulation of defense response to insect 3.37% (3/89) 3.69 0.001665 0.025771
GO:0045492 xylan biosynthetic process 3.37% (3/89) 3.69 0.001665 0.025771
GO:0009404 toxin metabolic process 4.49% (4/89) 2.98 0.001723 0.026409
GO:0005911 cell-cell junction 17.98% (16/89) 1.17 0.001759 0.026686
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor 4.49% (4/89) 2.96 0.00178 0.026741
GO:0070161 anchoring junction 17.98% (16/89) 1.16 0.001902 0.028016
GO:0098655 cation transmembrane transport 6.74% (6/89) 2.22 0.001891 0.028126
GO:0006811 ion transport 11.24% (10/89) 1.56 0.002111 0.029927
GO:0015297 antiporter activity 4.49% (4/89) 2.9 0.002085 0.030122
GO:0042744 hydrogen peroxide catabolic process 3.37% (3/89) 3.58 0.002065 0.030127
GO:0045488 pectin metabolic process 5.62% (5/89) 2.48 0.002106 0.030142
GO:0070205 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity 1.12% (1/89) 8.78 0.002277 0.031689
GO:0010393 galacturonan metabolic process 5.62% (5/89) 2.45 0.002273 0.031924
GO:0044282 small molecule catabolic process 6.74% (6/89) 2.15 0.002405 0.03201
GO:0016051 carbohydrate biosynthetic process 6.74% (6/89) 2.15 0.002405 0.03201
GO:0015298 solute:cation antiporter activity 3.37% (3/89) 3.52 0.002344 0.032321
GO:0030244 cellulose biosynthetic process 3.37% (3/89) 3.51 0.002402 0.032534
GO:0020037 heme binding 5.62% (5/89) 2.44 0.002397 0.032766
GO:0072593 reactive oxygen species metabolic process 4.49% (4/89) 2.83 0.002496 0.032922
GO:0097599 xylanase activity 2.25% (2/89) 4.73 0.002585 0.033519
GO:0071669 plant-type cell wall organization or biogenesis 7.87% (7/89) 1.92 0.00257 0.033608
GO:0005996 monosaccharide metabolic process 4.49% (4/89) 2.77 0.002878 0.037
GO:0005515 protein binding 52.81% (47/89) 0.48 0.002908 0.03707
GO:0051274 beta-glucan biosynthetic process 3.37% (3/89) 3.4 0.002967 0.037201
GO:0071805 potassium ion transmembrane transport 3.37% (3/89) 3.4 0.002967 0.037201
GO:0005315 inorganic phosphate transmembrane transporter activity 2.25% (2/89) 4.61 0.003071 0.037269
GO:0102627 parthenolide 3beta-hydroxylase activity 2.25% (2/89) 4.61 0.003071 0.037269
GO:0102628 costunolide 3beta-hydroxylase activity 2.25% (2/89) 4.61 0.003071 0.037269
GO:0043226 organelle 55.06% (49/89) 0.45 0.003156 0.038001
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 5.62% (5/89) 2.35 0.003067 0.038131
GO:0009403 toxin biosynthetic process 3.37% (3/89) 3.34 0.003314 0.039582
GO:0044262 cellular carbohydrate metabolic process 7.87% (7/89) 1.85 0.003393 0.039902
GO:0080044 quercetin 7-O-glucosyltransferase activity 3.37% (3/89) 3.33 0.003386 0.040128
GO:0016131 brassinosteroid metabolic process 3.37% (3/89) 3.29 0.003684 0.04299
GO:0006720 isoprenoid metabolic process 8.99% (8/89) 1.66 0.003897 0.045131
GO:0060416 response to growth hormone 2.25% (2/89) 4.42 0.003968 0.045598
GO:0030243 cellulose metabolic process 3.37% (3/89) 3.23 0.004079 0.046521
GO:0015386 potassium:proton antiporter activity 2.25% (2/89) 4.39 0.00416 0.047094
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 5.62% (5/89) 2.24 0.004232 0.047209
GO:1901659 glycosyl compound biosynthetic process 5.62% (5/89) 2.24 0.004232 0.047209
GO:0042743 hydrogen peroxide metabolic process 3.37% (3/89) 3.17 0.004585 0.047639
GO:0097264 self proteolysis 2.25% (2/89) 4.32 0.004557 0.047677
GO:0022853 active ion transmembrane transporter activity 5.62% (5/89) 2.21 0.004628 0.047763
GO:0089722 phosphoenolpyruvate transmembrane transport 1.12% (1/89) 7.78 0.004549 0.047919
GO:0033611 oxalate catabolic process 1.12% (1/89) 7.78 0.004549 0.047919
GO:0050203 oxalate-CoA ligase activity 1.12% (1/89) 7.78 0.004549 0.047919
GO:0042469 versicolorin reductase activity 1.12% (1/89) 7.78 0.004549 0.047919
GO:0045460 sterigmatocystin metabolic process 1.12% (1/89) 7.78 0.004549 0.047919
GO:0045461 sterigmatocystin biosynthetic process 1.12% (1/89) 7.78 0.004549 0.047919
GO:1905815 regulation of dorsal/ventral axon guidance 1.12% (1/89) 7.78 0.004549 0.047919
GO:0006812 cation transport 7.87% (7/89) 1.76 0.004788 0.048745
GO:0019203 carbohydrate phosphatase activity 2.25% (2/89) 4.29 0.004762 0.048811
GO:0015079 potassium ion transmembrane transporter activity 3.37% (3/89) 3.19 0.004412 0.048855
GO:0016129 phytosteroid biosynthetic process 2.25% (2/89) 4.26 0.004971 0.049943
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_245 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_252 0.016 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_253 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_259 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_18 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_25 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_40 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_96 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_120 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_136 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_143 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_145 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_156 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_157 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_168 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_175 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_188 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_191 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_198 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_210 0.026 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_215 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_224 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_237 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (89) (download table)

InterPro Domains

GO Terms

Family Terms