Coexpression cluster: Cluster_188 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0010482 regulation of epidermal cell division 12.5% (9/72) 7.86 0.0 0.0
GO:0098755 maintenance of seed dormancy by absisic acid 9.72% (7/72) 8.31 0.0 0.0
GO:0010026 trichome differentiation 12.5% (9/72) 6.93 0.0 0.0
GO:0051567 histone H3-K9 methylation 12.5% (9/72) 6.67 0.0 0.0
GO:0061647 histone H3-K9 modification 12.5% (9/72) 6.45 0.0 0.0
GO:0048764 trichoblast maturation 12.5% (9/72) 5.7 0.0 0.0
GO:0048765 root hair cell differentiation 12.5% (9/72) 5.7 0.0 0.0
GO:0048469 cell maturation 12.5% (9/72) 5.32 0.0 0.0
GO:0010053 root epidermal cell differentiation 13.89% (10/72) 4.74 0.0 0.0
GO:0010231 maintenance of seed dormancy 9.72% (7/72) 5.96 0.0 0.0
GO:0097437 maintenance of dormancy 9.72% (7/72) 5.96 0.0 0.0
GO:0034968 histone lysine methylation 12.5% (9/72) 4.91 0.0 0.0
GO:0018022 peptidyl-lysine methylation 12.5% (9/72) 4.77 0.0 0.0
GO:0016571 histone methylation 12.5% (9/72) 4.65 0.0 0.0
GO:0090627 plant epidermal cell differentiation 13.89% (10/72) 4.18 0.0 0.0
GO:0006479 protein methylation 12.5% (9/72) 4.35 0.0 0.0
GO:0008213 protein alkylation 12.5% (9/72) 4.35 0.0 0.0
GO:0071695 anatomical structure maturation 15.28% (11/72) 3.65 0.0 0.0
GO:0010162 seed dormancy process 9.72% (7/72) 4.96 0.0 0.0
GO:0022611 dormancy process 9.72% (7/72) 4.71 0.0 1e-06
GO:0021700 developmental maturation 15.28% (11/72) 3.34 0.0 1e-06
GO:0043414 macromolecule methylation 12.5% (9/72) 3.7 0.0 2e-06
GO:0051302 regulation of cell division 12.5% (9/72) 3.6 0.0 3e-06
GO:0018205 peptidyl-lysine modification 12.5% (9/72) 3.42 0.0 8e-06
GO:0016570 histone modification 12.5% (9/72) 3.17 1e-06 3.5e-05
GO:0032259 methylation 12.5% (9/72) 3.14 1e-06 4e-05
GO:0005829 cytosol 36.11% (26/72) 1.34 3e-06 0.000143
GO:0010029 regulation of seed germination 11.11% (8/72) 3.12 4e-06 0.000168
GO:0048658 anther wall tapetum development 6.94% (5/72) 4.37 5e-06 0.000191
GO:1901428 regulation of syringal lignin biosynthetic process 5.56% (4/72) 5.15 5e-06 0.000199
GO:1901430 positive regulation of syringal lignin biosynthetic process 5.56% (4/72) 5.15 5e-06 0.000199
GO:1900140 regulation of seedling development 11.11% (8/72) 2.99 8e-06 0.000288
GO:0050113 inositol oxygenase activity 2.78% (2/72) 8.08 2e-05 0.000733
GO:0050734 hydroxycinnamoyltransferase activity 4.17% (3/72) 5.76 2.3e-05 0.000834
GO:1900378 positive regulation of secondary metabolite biosynthetic process 5.56% (4/72) 4.58 2.5e-05 0.000865
GO:0002215 defense response to nematode 5.56% (4/72) 4.53 2.8e-05 0.000955
GO:0033530 raffinose metabolic process 2.78% (2/72) 7.76 3.3e-05 0.00106
GO:0034484 raffinose catabolic process 2.78% (2/72) 7.76 3.3e-05 0.00106
GO:0009313 oligosaccharide catabolic process 4.17% (3/72) 5.38 5.2e-05 0.001538
GO:0047274 galactinol-sucrose galactosyltransferase activity 2.78% (2/72) 7.5 5e-05 0.001547
GO:0004601 peroxidase activity 6.94% (5/72) 3.64 5.2e-05 0.001572
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor 6.94% (5/72) 3.59 6.2e-05 0.001777
GO:0019310 inositol catabolic process 2.78% (2/72) 7.28 7e-05 0.001918
GO:0052692 raffinose alpha-galactosidase activity 2.78% (2/72) 7.28 7e-05 0.001918
GO:0071704 organic substance metabolic process 59.72% (43/72) 0.69 7.5e-05 0.002013
GO:0018193 peptidyl-amino acid modification 12.5% (9/72) 2.27 0.000103 0.002583
GO:0050789 regulation of biological process 55.56% (40/72) 0.73 0.000102 0.002612
GO:0003006 developmental process involved in reproduction 31.94% (23/72) 1.17 0.000101 0.002665
GO:0016209 antioxidant activity 6.94% (5/72) 3.37 0.000129 0.00317
GO:0030154 cell differentiation 16.67% (12/72) 1.81 0.000137 0.003314
GO:0004557 alpha-galactosidase activity 2.78% (2/72) 6.76 0.000149 0.003465
GO:0015925 galactosidase activity 4.17% (3/72) 4.89 0.000147 0.003476
GO:0009987 cellular process 73.61% (53/72) 0.5 0.000165 0.003754
GO:0003824 catalytic activity 54.17% (39/72) 0.71 0.000172 0.003848
GO:0110165 cellular anatomical entity 80.56% (58/72) 0.42 0.000182 0.003995
GO:0008152 metabolic process 61.11% (44/72) 0.62 0.000198 0.004265
GO:0009793 embryo development ending in seed dormancy 12.5% (9/72) 2.13 0.000204 0.004331
GO:0048580 regulation of post-embryonic development 15.28% (11/72) 1.81 0.000273 0.005599
GO:0010087 phloem or xylem histogenesis 9.72% (7/72) 2.47 0.000273 0.005683
GO:1901564 organonitrogen compound metabolic process 40.28% (29/72) 0.89 0.000303 0.006004
GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 4.17% (3/72) 4.54 0.0003 0.006044
GO:0005575 cellular_component 80.56% (58/72) 0.4 0.000311 0.00606
GO:0016174 NAD(P)H oxidase H2O2-forming activity 2.78% (2/72) 6.18 0.000346 0.006633
GO:0016052 carbohydrate catabolic process 8.33% (6/72) 2.68 0.000354 0.006681
GO:0016651 oxidoreductase activity, acting on NAD(P)H 5.56% (4/72) 3.57 0.000373 0.006828
GO:0022414 reproductive process 34.72% (25/72) 0.98 0.00037 0.006877
GO:1901141 regulation of lignin biosynthetic process 5.56% (4/72) 3.55 0.000397 0.007152
GO:0008150 biological_process 80.56% (58/72) 0.39 0.000423 0.007517
GO:0044281 small molecule metabolic process 23.61% (17/72) 1.27 0.000477 0.008355
GO:0098542 defense response to other organism 25.0% (18/72) 1.17 0.000738 0.012733
GO:0048869 cellular developmental process 19.44% (14/72) 1.38 0.000787 0.013198
GO:0048609 multicellular organismal reproductive process 11.11% (8/72) 2.02 0.000777 0.013214
GO:0065007 biological regulation 55.56% (40/72) 0.6 0.00085 0.014069
GO:0016491 oxidoreductase activity 18.06% (13/72) 1.43 0.000898 0.014662
GO:0050794 regulation of cellular process 47.22% (34/72) 0.69 0.000911 0.014679
GO:0048856 anatomical structure development 36.11% (26/72) 0.86 0.001042 0.016566
GO:0006020 inositol metabolic process 2.78% (2/72) 5.38 0.001057 0.016578
GO:0032502 developmental process 44.44% (32/72) 0.72 0.001088 0.01685
GO:0019751 polyol metabolic process 4.17% (3/72) 3.88 0.001153 0.017624
GO:0009505 plant-type cell wall 9.72% (7/72) 2.09 0.001289 0.019462
GO:0002679 respiratory burst involved in defense response 2.78% (2/72) 5.18 0.001408 0.020993
GO:0009790 embryo development 12.5% (9/72) 1.73 0.001506 0.022182
GO:0044237 cellular metabolic process 51.39% (37/72) 0.6 0.001645 0.023948
GO:0019853 L-ascorbic acid biosynthetic process 2.78% (2/72) 5.04 0.001703 0.024484
GO:2000026 regulation of multicellular organismal development 15.28% (11/72) 1.47 0.001857 0.026089
GO:0047634 agmatine N4-coumaroyltransferase activity 1.39% (1/72) 9.08 0.001842 0.026178
GO:0046174 polyol catabolic process 2.78% (2/72) 4.91 0.002024 0.028106
GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor 2.78% (2/72) 4.88 0.002137 0.02934
GO:0010089 xylem development 5.56% (4/72) 2.88 0.002213 0.030033
GO:1901616 organic hydroxy compound catabolic process 4.17% (3/72) 3.52 0.002331 0.031283
GO:0006979 response to oxidative stress 12.5% (9/72) 1.63 0.002404 0.03191
GO:0044275 cellular carbohydrate catabolic process 4.17% (3/72) 3.47 0.002571 0.033753
GO:0019852 L-ascorbic acid metabolic process 2.78% (2/72) 4.66 0.002877 0.037374
GO:0007275 multicellular organism development 16.67% (12/72) 1.3 0.003026 0.038884
GO:1901336 lactone biosynthetic process 2.78% (2/72) 4.59 0.003147 0.040017
GO:2000762 regulation of phenylpropanoid metabolic process 5.56% (4/72) 2.73 0.003199 0.040252
GO:0071456 cellular response to hypoxia 5.56% (4/72) 2.69 0.003486 0.043408
GO:0032486 Rap protein signal transduction 1.39% (1/72) 8.08 0.003681 0.044911
GO:0051707 response to other organism 27.78% (20/72) 0.89 0.003672 0.045264
GO:0036294 cellular response to decreased oxygen levels 5.56% (4/72) 2.66 0.003789 0.045775
GO:0005509 calcium ion binding 5.56% (4/72) 2.62 0.004194 0.049184
GO:0009888 tissue development 11.11% (8/72) 1.64 0.004138 0.049495
GO:0006807 nitrogen compound metabolic process 43.06% (31/72) 0.62 0.004194 0.049664
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_202 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_211 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_229 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_242 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_253 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_448 0.016 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_70 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_84 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_121 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_143 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_163 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_164 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_168 0.019 Orthogroups with 8 Potato genotypes Compare
Sequences (72) (download table)

InterPro Domains

GO Terms

Family Terms