SOLTUB.AGRIA.G00000012497

Description : ERAD-associated E3 ubiquitin-protein ligase component HRD3A

Gene families : OG_02_0008699 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000012497
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_248

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
CC	GO:0000153	cytoplasmic ubiquitin ligase complex	None	Extended
CC	GO:0000835	ER ubiquitin ligase complex	None	Extended
CC	GO:0000836	Hrd1p ubiquitin ligase complex	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006972	hyperosmotic response	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0015031	protein transport	IEA	AHRD
CC	GO:0016021	integral component of membrane	IEA	AHRD
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0030433	ubiquitin-dependent ERAD pathway	IEA	AHRD
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034976	response to endoplasmic reticulum stress	None	Extended
BP	GO:0036503	ERAD pathway	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042538	hyperosmotic salinity response	IEA	AHRD
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0048519	negative regulation of biological process	IEA	AHRD
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140534	endoplasmic reticulum protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003924	GTPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007029	endoplasmic reticulum organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010053	root epidermal cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0016320	endoplasmic reticulum membrane fusion	IEP	Predict GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030029	actin filament-based process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030036	actin cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0048284	organelle fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0061025	membrane fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0090158	endoplasmic reticulum membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0090174	organelle membrane fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0090627	plant epidermal cell differentiation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006597	Sel1-like	443	460
IPR006597	Sel1-like	397	427
IPR006597	Sel1-like	510	533
IPR006597	Sel1-like	130	165
IPR006597	Sel1-like	322	355
IPR006597	Sel1-like	361	379
IPR006597	Sel1-like	545	577
IPR006597	Sel1-like	249	283
IPR006597	Sel1-like	286	318

External Links

No external refs found!

SOLTUB.AGRIA.G00000012497

Expression Profile

Co-expression Networks

Functional Annotation