SOLTUB.AGRIA.G00000018277


Description : ATP-dependent DNA helicase family protein


Gene families : OG_02_0014847 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000018277
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_325


Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEA AHRD
MF GO:0000400 four-way junction DNA binding IEA AHRD
MF GO:0000403 Y-form DNA binding IEA AHRD
MF GO:0000405 bubble DNA binding IEA AHRD
BP GO:0000712 resolution of meiotic recombination intermediates IEA AHRD
BP GO:0000722 telomere maintenance via recombination IEA AHRD
BP GO:0000731 DNA synthesis involved in DNA repair IEA AHRD
BP GO:0000732 strand displacement IEA AHRD
CC GO:0000781 chromosome, telomeric region IEA AHRD
CC GO:0000800 lateral element IEA AHRD
MF GO:0002039 p53 binding IEA AHRD
MF GO:0005524 ATP binding IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0006268 DNA unwinding involved in DNA replication IEA AHRD
BP GO:0006303 double-strand break repair via nonhomologous end joining IEA AHRD
BP GO:0007095 mitotic G2 DNA damage checkpoint signaling IEA AHRD
BP GO:0007534 gene conversion at mating-type locus IEA AHRD
MF GO:0008270 zinc ion binding IEA AHRD
BP GO:0008340 determination of adult lifespan IEA AHRD
MF GO:0009378 four-way junction helicase activity IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
BP GO:0010165 response to X-ray IEA AHRD
BP GO:0010520 regulation of reciprocal meiotic recombination IEA AHRD
BP GO:0010705 meiotic DNA double-strand break processing involved in reciprocal meiotic recombination IEA AHRD
BP GO:0010947 negative regulation of meiotic joint molecule formation IEA AHRD
CC GO:0016363 nuclear matrix IEA AHRD
CC GO:0016592 mediator complex IEA AHRD
CC GO:0016605 PML body IEA AHRD
MF GO:0017116 single-stranded DNA helicase activity IEA AHRD
CC GO:0017117 single-stranded DNA-dependent ATP-dependent DNA helicase complex IEA AHRD
MF GO:0019899 enzyme binding IEA AHRD
CC GO:0030894 replisome IEA AHRD
BP GO:0031297 replication fork processing IEA AHRD
BP GO:0031573 mitotic intra-S DNA damage checkpoint signaling IEA AHRD
BP GO:0031860 telomeric 3' overhang formation IEA AHRD
MF GO:0036310 ATP-dependent DNA/DNA annealing activity IEA AHRD
BP GO:0042631 cellular response to water deprivation IEA AHRD
MF GO:0042803 protein homodimerization activity IEA AHRD
BP GO:0043066 negative regulation of apoptotic process IEA AHRD
MF GO:0043138 3'-5' DNA helicase activity IEA AHRD
CC GO:0043590 bacterial nucleoid IEA AHRD
BP GO:0044806 G-quadruplex DNA unwinding IEA AHRD
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEA AHRD
BP GO:0045893 positive regulation of DNA-templated transcription IEA AHRD
BP GO:0045910 negative regulation of DNA recombination IEA AHRD
BP GO:0051260 protein homooligomerization IEA AHRD
BP GO:0051782 negative regulation of cell division IEA AHRD
MF GO:0051880 G-quadruplex DNA binding IEA AHRD
MF GO:0061749 forked DNA-dependent helicase activity IEA AHRD
BP GO:0061820 telomeric D-loop disassembly IEA AHRD
MF GO:0061821 telomeric D-loop binding IEA AHRD
BP GO:0070417 cellular response to cold IEA AHRD
BP GO:0071139 resolution of recombination intermediates IEA AHRD
BP GO:0071215 cellular response to abscisic acid stimulus IEA AHRD
BP GO:0071479 cellular response to ionizing radiation IEA AHRD
BP GO:0072711 cellular response to hydroxyurea IEA AHRD
BP GO:0072757 cellular response to camptothecin IEA AHRD
BP GO:0090329 regulation of DNA-templated DNA replication IEA AHRD
BP GO:1901291 negative regulation of double-strand break repair via single-strand annealing IEA AHRD
MF GO:1905773 8-hydroxy-2'-deoxyguanosine DNA binding IEA AHRD
BP GO:1990918 double-strand break repair involved in meiotic recombination IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Predict GO terms from Neighborhoods
BP GO:0006260 DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006261 DNA-templated DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006270 DNA replication initiation IEP Predict GO terms from Neighborhoods
BP GO:0006298 mismatch repair IEP Predict GO terms from Neighborhoods
BP GO:0007049 cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0007276 gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0007292 female gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0010569 regulation of double-strand break repair via homologous recombination IEP Predict GO terms from Neighborhoods
BP GO:0010638 positive regulation of organelle organization IEP Predict GO terms from Neighborhoods
BP GO:0010639 negative regulation of organelle organization IEP Predict GO terms from Neighborhoods
CC GO:0031261 DNA replication preinitiation complex IEP Predict GO terms from Neighborhoods
BP GO:0032201 telomere maintenance via semi-conservative replication IEP Predict GO terms from Neighborhoods
BP GO:0032204 regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
BP GO:0032205 negative regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
BP GO:0032206 positive regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
MF GO:0032404 mismatch repair complex binding IEP Predict GO terms from Neighborhoods
MF GO:0032406 MutLbeta complex binding IEP Predict GO terms from Neighborhoods
MF GO:0032407 MutSalpha complex binding IEP Predict GO terms from Neighborhoods
MF GO:0032408 MutSbeta complex binding IEP Predict GO terms from Neighborhoods
BP GO:0032780 negative regulation of ATP-dependent activity IEP Predict GO terms from Neighborhoods
BP GO:0033044 regulation of chromosome organization IEP Predict GO terms from Neighborhoods
BP GO:0033260 nuclear DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0034502 protein localization to chromosome IEP Predict GO terms from Neighborhoods
BP GO:0036297 interstrand cross-link repair IEP Predict GO terms from Neighborhoods
BP GO:0036298 recombinational interstrand cross-link repair IEP Predict GO terms from Neighborhoods
CC GO:0042555 MCM complex IEP Predict GO terms from Neighborhoods
BP GO:0043007 maintenance of rDNA IEP Predict GO terms from Neighborhoods
BP GO:0043086 negative regulation of catalytic activity IEP Predict GO terms from Neighborhoods
BP GO:0043462 regulation of ATP-dependent activity IEP Predict GO terms from Neighborhoods
BP GO:0043570 maintenance of DNA repeat elements IEP Predict GO terms from Neighborhoods
BP GO:0044786 cell cycle DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0051054 positive regulation of DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051095 regulation of helicase activity IEP Predict GO terms from Neighborhoods
BP GO:0051097 negative regulation of helicase activity IEP Predict GO terms from Neighborhoods
BP GO:0051129 negative regulation of cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0051321 meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0070182 DNA polymerase binding IEP Predict GO terms from Neighborhoods
BP GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0071168 protein localization to chromatin IEP Predict GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex subunit organization IEP Predict GO terms from Neighborhoods
CC GO:0097362 MCM8-MCM9 complex IEP Predict GO terms from Neighborhoods
BP GO:1902990 mitotic telomere maintenance via semi-conservative replication IEP Predict GO terms from Neighborhoods
BP GO:1904353 regulation of telomere capping IEP Predict GO terms from Neighborhoods
BP GO:1904355 positive regulation of telomere capping IEP Predict GO terms from Neighborhoods
BP GO:1904356 regulation of telomere maintenance via telomere lengthening IEP Predict GO terms from Neighborhoods
BP GO:1904358 positive regulation of telomere maintenance via telomere lengthening IEP Predict GO terms from Neighborhoods
BP GO:1904429 regulation of t-circle formation IEP Predict GO terms from Neighborhoods
BP GO:1904430 negative regulation of t-circle formation IEP Predict GO terms from Neighborhoods
BP GO:1904505 regulation of telomere maintenance in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:1904506 negative regulation of telomere maintenance in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:1904533 regulation of telomeric loop disassembly IEP Predict GO terms from Neighborhoods
BP GO:1904535 positive regulation of telomeric loop disassembly IEP Predict GO terms from Neighborhoods
BP GO:2001251 negative regulation of chromosome organization IEP Predict GO terms from Neighborhoods
BP GO:2001252 positive regulation of chromosome organization IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 340 500
IPR001650 Helicase_C 550 646
IPR027417 P-loop_NTPase 347 659
IPR004589 DNA_helicase_ATP-dep_RecQ 328 673
No external refs found!