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  5. SOLTUB.AGRIA.G00000025797

SOLTUB.AGRIA.G00000025797


Description : F-box/RNI-like/FBD-like domains-containing protein


Gene families : OG_02_0000077 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000025797
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_254


Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005575 cellular_component IEA AHRD
CC GO:0005777 peroxisome IEA AHRD
BP GO:0008150 biological_process IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predict GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predict GO terms from Neighborhoods
BP GO:0000380 alternative mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000395 mRNA 5'-splice site recognition IEP Predict GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0000792 heterochromatin IEP Predict GO terms from Neighborhoods
CC GO:0000974 Prp19 complex IEP Predict GO terms from Neighborhoods
MF GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0001046 core promoter sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0001091 RNA polymerase II general transcription initiation factor binding IEP Predict GO terms from Neighborhoods
MF GO:0001094 TFIID-class transcription factor complex binding IEP Predict GO terms from Neighborhoods
MF GO:0001098 basal transcription machinery binding IEP Predict GO terms from Neighborhoods
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP Predict GO terms from Neighborhoods
BP GO:0001701 in utero embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0003012 muscle system process IEP Predict GO terms from Neighborhoods
CC GO:0005669 transcription factor TFIID complex IEP Predict GO terms from Neighborhoods
CC GO:0005672 transcription factor TFIIA complex IEP Predict GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005684 U2-type spliceosomal complex IEP Predict GO terms from Neighborhoods
BP GO:0006376 mRNA splice site selection IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006414 translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0006936 muscle contraction IEP Predict GO terms from Neighborhoods
BP GO:0006941 striated muscle contraction IEP Predict GO terms from Neighborhoods
BP GO:0007062 sister chromatid cohesion IEP Predict GO terms from Neighborhoods
BP GO:0007064 mitotic sister chromatid cohesion IEP Predict GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0009790 embryo development IEP Predict GO terms from Neighborhoods
BP GO:0009792 embryo development ending in birth or egg hatching IEP Predict GO terms from Neighborhoods
BP GO:0010628 positive regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016251 RNA polymerase II general transcription initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0017025 TBP-class protein binding IEP Predict GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0017070 U6 snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0019207 kinase regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0019209 kinase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0019221 cytokine-mediated signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0019887 protein kinase regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0022625 cytosolic large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0023019 signal transduction involved in regulation of gene expression IEP Predict GO terms from Neighborhoods
MF GO:0030295 protein kinase activator activity IEP Predict GO terms from Neighborhoods
CC GO:0031981 nuclear lumen IEP Predict GO terms from Neighborhoods
BP GO:0032147 activation of protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0032388 positive regulation of intracellular transport IEP Predict GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Predict GO terms from Neighborhoods
BP GO:0033120 positive regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0033157 regulation of intracellular protein transport IEP Predict GO terms from Neighborhoods
BP GO:0033674 positive regulation of kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0034504 protein localization to nucleus IEP Predict GO terms from Neighborhoods
CC GO:0035061 interchromatin granule IEP Predict GO terms from Neighborhoods
CC GO:0035145 exon-exon junction complex IEP Predict GO terms from Neighborhoods
MF GO:0036002 pre-mRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0042306 regulation of protein import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0042307 positive regulation of protein import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0043009 chordate embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0043279 response to alkaloid IEP Predict GO terms from Neighborhoods
BP GO:0043484 regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0043488 regulation of mRNA stability IEP Predict GO terms from Neighborhoods
BP GO:0043489 RNA stabilization IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
MF GO:0044547 DNA topoisomerase binding IEP Predict GO terms from Neighborhoods
MF GO:0044877 protein-containing complex binding IEP Predict GO terms from Neighborhoods
BP GO:0045292 mRNA cis splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0045860 positive regulation of protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0046822 regulation of nucleocytoplasmic transport IEP Predict GO terms from Neighborhoods
BP GO:0046824 positive regulation of nucleocytoplasmic transport IEP Predict GO terms from Neighborhoods
BP GO:0046825 regulation of protein export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0046827 positive regulation of protein export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0048255 mRNA stabilization IEP Predict GO terms from Neighborhoods
MF GO:0048306 calcium-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0050733 RS domain binding IEP Predict GO terms from Neighborhoods
BP GO:0051123 RNA polymerase II preinitiation complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0051222 positive regulation of protein transport IEP Predict GO terms from Neighborhoods
BP GO:0060048 cardiac muscle contraction IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0070897 transcription preinitiation complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0071006 U2-type catalytic step 1 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071007 U2-type catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071012 catalytic step 1 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071013 catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0090316 positive regulation of intracellular protein transport IEP Predict GO terms from Neighborhoods
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Predict GO terms from Neighborhoods
BP GO:0097400 interleukin-17-mediated signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0097550 transcription preinitiation complex IEP Predict GO terms from Neighborhoods
BP GO:0110012 protein localization to P-body IEP Predict GO terms from Neighborhoods
MF GO:0140223 general transcription initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0140296 general transcription initiation factor binding IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:1900180 regulation of protein localization to nucleus IEP Predict GO terms from Neighborhoods
BP GO:1900182 positive regulation of protein localization to nucleus IEP Predict GO terms from Neighborhoods
BP GO:1902369 negative regulation of RNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902373 negative regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903312 negative regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1904951 positive regulation of establishment of protein localization IEP Predict GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR036047 F-box-like_dom_sf 14 71
IPR006566 FBD 356 390
IPR001810 F-box_dom 17 54
No external refs found!