SOLTUB.AGRIA.G00000027187

Description : L-threonine dehydratase catabolic TdcB

Gene families : OG_02_0000595 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000027187
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_69

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0000287	magnesium ion binding	IEA	AHRD
BP	GO:0002237	response to molecule of bacterial origin	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003941	L-serine ammonia-lyase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	IEA	AHRD
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006563	L-serine metabolic process	None	Extended
BP	GO:0006565	L-serine catabolic process	IEA	AHRD
BP	GO:0006575	cellular modified amino acid metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007420	brain development	IEA	AHRD
BP	GO:0007568	aging	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	cellular amino acid biosynthetic process	None	Extended
MF	GO:0008721	D-serine ammonia-lyase activity	IEA	AHRD
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009063	cellular amino acid catabolic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009070	serine family amino acid biosynthetic process	None	Extended
BP	GO:0009071	serine family amino acid catabolic process	None	Extended
BP	GO:0009436	glyoxylate catabolic process	IEA	AHRD
BP	GO:0009441	glycolate metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0014072	response to isoquinoline alkaloid	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
MF	GO:0016594	glycine binding	IEA	AHRD
MF	GO:0016597	amino acid binding	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	IEA	AHRD
MF	GO:0016840	carbon-nitrogen lyase activity	None	Extended
MF	GO:0016841	ammonia-lyase activity	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016854	racemase and epimerase activity	None	Extended
MF	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0018114	threonine racemase activity	IEA	AHRD
BP	GO:0018249	protein dehydration	IEA	AHRD
BP	GO:0019478	D-amino acid catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0019904	protein domain specific binding	None	Extended
MF	GO:0030165	PDZ domain binding	IEA	AHRD
MF	GO:0030170	pyridoxal phosphate binding	IEA	AHRD
MF	GO:0030378	serine racemase activity	IEA	AHRD
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030848	threo-3-hydroxyaspartate ammonia-lyase activity	IEA	AHRD
MF	GO:0031406	carboxylic acid binding	None	Extended
BP	GO:0032496	response to lipopolysaccharide	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0034308	primary alcohol metabolic process	None	Extended
BP	GO:0034310	primary alcohol catabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
BP	GO:0036088	D-serine catabolic process	IEA	AHRD
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0036361	racemase activity, acting on amino acids and derivatives	None	Extended
BP	GO:0042219	cellular modified amino acid catabolic process	IEA	AHRD
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IEA	AHRD
BP	GO:0042866	pyruvate biosynthetic process	IEA	AHRD
CC	GO:0043025	neuronal cell body	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043177	organic acid binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043278	response to morphine	IEA	AHRD
BP	GO:0043279	response to alkaloid	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
MF	GO:0043621	protein self-association	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
CC	GO:0044297	cell body	None	Extended
CC	GO:0045177	apical part of cell	IEA	AHRD
BP	GO:0046164	alcohol catabolic process	None	Extended
BP	GO:0046185	aldehyde catabolic process	None	Extended
BP	GO:0046296	glycolate catabolic process	IEA	AHRD
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0046416	D-amino acid metabolic process	None	Extended
BP	GO:0046437	D-amino acid biosynthetic process	None	Extended
BP	GO:0046487	glyoxylate metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
MF	GO:0047661	amino-acid racemase activity	None	Extended
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0070178	D-serine metabolic process	None	Extended
BP	GO:0070179	D-serine biosynthetic process	IEA	AHRD
MF	GO:0070279	vitamin B6 binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072329	monocarboxylic acid catabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901606	alpha-amino acid catabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901616	organic hydroxy compound catabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000086	G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0000266	mitochondrial fission	IEP	Predict GO terms from Neighborhoods
BP	GO:0000429	carbon catabolite regulation of transcription from RNA polymerase II promoter	IEP	Predict GO terms from Neighborhoods
BP	GO:0000436	carbon catabolite activation of transcription from RNA polymerase II promoter	IEP	Predict GO terms from Neighborhoods
BP	GO:0000966	RNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	IEP	Predict GO terms from Neighborhoods
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001216	DNA-binding transcription activator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	IEP	Predict GO terms from Neighborhoods
MF	GO:0003712	transcription coregulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005654	nucleoplasm	IEP	Predict GO terms from Neighborhoods
CC	GO:0005667	transcription regulator complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005741	mitochondrial outer membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006109	regulation of carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007005	mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007584	response to nutrient	IEP	Predict GO terms from Neighborhoods
BP	GO:0008053	mitochondrial fusion	IEP	Predict GO terms from Neighborhoods
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008193	tRNA guanylyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010029	regulation of seed germination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010099	regulation of photomorphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010675	regulation of cellular carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010677	negative regulation of cellular carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016579	protein deubiquitination	IEP	Predict GO terms from Neighborhoods
CC	GO:0016602	CCAAT-binding factor complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016906	sterol 3-beta-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0018995	host cellular component	IEP	Predict GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030433	ubiquitin-dependent ERAD pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	Predict GO terms from Neighborhoods
BP	GO:0031669	cellular response to nutrient levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0031670	cellular response to nutrient	IEP	Predict GO terms from Neighborhoods
CC	GO:0031977	thylakoid lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032881	regulation of polysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0032993	protein-DNA complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0043457	regulation of cellular respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	Predict GO terms from Neighborhoods
CC	GO:0043657	host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0044839	cell cycle G2/M phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0045912	negative regulation of carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0045990	carbon catabolite regulation of transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045991	carbon catabolite activation of transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0048579	negative regulation of long-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0048581	negative regulation of post-embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048582	positive regulation of post-embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048586	regulation of long-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0051259	protein complex oligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051260	protein homooligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051289	protein homotetramerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0070568	guanylyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0097602	cullin family protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0097748	3'-5' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0099116	tRNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900140	regulation of seedling development	IEP	Predict GO terms from Neighborhoods
BP	GO:1990046	stress-induced mitochondrial fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:2000028	regulation of photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:2000030	regulation of response to red or far red light	IEP	Predict GO terms from Neighborhoods
BP	GO:2000242	negative regulation of reproductive process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000306	positive regulation of photomorphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:2000904	regulation of starch metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000905	negative regulation of starch metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036052	Trypto_synt_PLP_dependent	16	326
IPR001926	PLP-dep	28	299

External Links

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SOLTUB.AGRIA.G00000027187

Expression Profile

Co-expression Networks

Functional Annotation