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  5. SOLTUB.AGRIA.G00000028076

SOLTUB.AGRIA.G00000028076


Description : RNA recognition motif-containing family protein


Gene families : OG_02_0021653 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000028076
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_59


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA AHRD
BP GO:0006397 mRNA processing IEA AHRD
BP GO:0008380 RNA splicing IEA AHRD
CC GO:0016607 nuclear speck IEA AHRD
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0000255 allantoin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0000349 generation of catalytic spliceosome for first transesterification step IEP Predict GO terms from Neighborhoods
MF GO:0000400 four-way junction DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0000403 Y-form DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0000405 bubble DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0000414 regulation of histone H3-K36 methylation IEP Predict GO terms from Neighborhoods
BP GO:0000731 DNA synthesis involved in DNA repair IEP Predict GO terms from Neighborhoods
CC GO:0000974 Prp19 complex IEP Predict GO terms from Neighborhoods
MF GO:0001222 transcription corepressor binding IEP Predict GO terms from Neighborhoods
BP GO:0001325 formation of extrachromosomal circular DNA IEP Predict GO terms from Neighborhoods
CC GO:0001401 SAM complex IEP Predict GO terms from Neighborhoods
BP GO:0001702 gastrulation with mouth forming second IEP Predict GO terms from Neighborhoods
BP GO:0001893 maternal placenta development IEP Predict GO terms from Neighborhoods
BP GO:0002250 adaptive immune response IEP Predict GO terms from Neighborhoods
BP GO:0002443 leukocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002449 lymphocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002456 T cell mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002458 peripheral T cell tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains IEP Predict GO terms from Neighborhoods
BP GO:0002461 tolerance induction dependent upon immune response IEP Predict GO terms from Neighborhoods
BP GO:0002465 peripheral tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002507 tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002508 central tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002509 central tolerance induction to self antigen IEP Predict GO terms from Neighborhoods
BP GO:0002513 tolerance induction to self antigen IEP Predict GO terms from Neighborhoods
BP GO:0002517 T cell tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002685 regulation of leukocyte migration IEP Predict GO terms from Neighborhoods
MF GO:0003714 transcription corepressor activity IEP Predict GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0004854 xanthine dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0004855 xanthine oxidase activity IEP Predict GO terms from Neighborhoods
CC GO:0005667 transcription regulator complex IEP Predict GO terms from Neighborhoods
CC GO:0005705 polytene chromosome interband IEP Predict GO terms from Neighborhoods
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Predict GO terms from Neighborhoods
CC GO:0005813 centrosome IEP Predict GO terms from Neighborhoods
BP GO:0005983 starch catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006012 galactose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006144 purine nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006145 purine nucleobase catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006147 guanine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006152 purine nucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006195 purine nucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006268 DNA unwinding involved in DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006284 base-excision repair IEP Predict GO terms from Neighborhoods
BP GO:0006379 mRNA cleavage IEP Predict GO terms from Neighborhoods
BP GO:0006959 humoral immune response IEP Predict GO terms from Neighborhoods
BP GO:0007008 outer mitochondrial membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0007063 regulation of sister chromatid cohesion IEP Predict GO terms from Neighborhoods
BP GO:0007319 negative regulation of oskar mRNA translation IEP Predict GO terms from Neighborhoods
BP GO:0007549 dosage compensation IEP Predict GO terms from Neighborhoods
BP GO:0007568 aging IEP Predict GO terms from Neighborhoods
BP GO:0009114 hypoxanthine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009115 xanthine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009119 ribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009120 deoxyribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009125 nucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009128 purine nucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009151 purine deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009154 purine ribonucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009155 purine deoxyribonucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009158 ribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009159 deoxyribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009162 deoxyribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009164 nucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009169 purine ribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009170 purine deoxyribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009172 purine deoxyribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009261 ribonucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009264 deoxyribonucleotide catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0009378 four-way junction helicase activity IEP Predict GO terms from Neighborhoods
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0009501 amyloplast IEP Predict GO terms from Neighborhoods
CC GO:0009569 chloroplast starch grain IEP Predict GO terms from Neighborhoods
BP GO:0009660 amyloplast organization IEP Predict GO terms from Neighborhoods
MF GO:0009702 L-arabinokinase activity IEP Predict GO terms from Neighborhoods
BP GO:0010021 amylopectin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010044 response to aluminum ion IEP Predict GO terms from Neighborhoods
BP GO:0010225 response to UV-C IEP Predict GO terms from Neighborhoods
BP GO:0010259 multicellular organism aging IEP Predict GO terms from Neighborhoods
BP GO:0010272 response to silver ion IEP Predict GO terms from Neighborhoods
CC GO:0010368 chloroplast isoamylase complex IEP Predict GO terms from Neighborhoods
CC GO:0016580 Sin3 complex IEP Predict GO terms from Neighborhoods
CC GO:0016581 NuRD complex IEP Predict GO terms from Neighborhoods
MF GO:0016623 oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Predict GO terms from Neighborhoods
MF GO:0016662 oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predict GO terms from Neighborhoods
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016727 oxidoreductase activity, acting on CH or CH2 groups, oxygen as acceptor IEP Predict GO terms from Neighborhoods
BP GO:0017015 regulation of transforming growth factor beta receptor signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0017116 single-stranded DNA helicase activity IEP Predict GO terms from Neighborhoods
CC GO:0017117 single-stranded DNA-dependent ATP-dependent DNA helicase complex IEP Predict GO terms from Neighborhoods
MF GO:0019156 isoamylase activity IEP Predict GO terms from Neighborhoods
MF GO:0019200 carbohydrate kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0019566 arabinose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019692 deoxyribose phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0021895 cerebral cortex neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0021953 central nervous system neuron differentiation IEP Predict GO terms from Neighborhoods
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predict GO terms from Neighborhoods
CC GO:0030123 AP-3 adaptor complex IEP Predict GO terms from Neighborhoods
MF GO:0030267 glyoxylate reductase (NADP+) activity IEP Predict GO terms from Neighborhoods
MF GO:0030331 nuclear estrogen receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0030334 regulation of cell migration IEP Predict GO terms from Neighborhoods
BP GO:0030510 regulation of BMP signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0030514 negative regulation of BMP signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0030686 90S preribosome IEP Predict GO terms from Neighborhoods
BP GO:0030856 regulation of epithelial cell differentiation IEP Predict GO terms from Neighborhoods
CC GO:0030894 replisome IEP Predict GO terms from Neighborhoods
CC GO:0030897 HOPS complex IEP Predict GO terms from Neighborhoods
BP GO:0031056 regulation of histone modification IEP Predict GO terms from Neighborhoods
BP GO:0031297 replication fork processing IEP Predict GO terms from Neighborhoods
MF GO:0031491 nucleosome binding IEP Predict GO terms from Neighborhoods
BP GO:0032201 telomere maintenance via semi-conservative replication IEP Predict GO terms from Neighborhoods
MF GO:0032356 oxidized DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0032357 oxidized purine DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0032404 mismatch repair complex binding IEP Predict GO terms from Neighborhoods
MF GO:0032405 MutLalpha complex binding IEP Predict GO terms from Neighborhoods
BP GO:0032642 regulation of chemokine production IEP Predict GO terms from Neighborhoods
BP GO:0032722 positive regulation of chemokine production IEP Predict GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Predict GO terms from Neighborhoods
CC GO:0033202 DNA helicase complex IEP Predict GO terms from Neighborhoods
BP GO:0033365 protein localization to organelle IEP Predict GO terms from Neighborhoods
BP GO:0034058 endosomal vesicle fusion IEP Predict GO terms from Neighborhoods
BP GO:0034465 response to carbon monoxide IEP Predict GO terms from Neighborhoods
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0035064 methylated histone binding IEP Predict GO terms from Neighborhoods
BP GO:0035066 positive regulation of histone acetylation IEP Predict GO terms from Neighborhoods
MF GO:0035613 RNA stem-loop binding IEP Predict GO terms from Neighborhoods
MF GO:0036310 ATP-dependent DNA/DNA annealing activity IEP Predict GO terms from Neighborhoods
BP GO:0040009 regulation of growth rate IEP Predict GO terms from Neighborhoods
BP GO:0042278 purine nucleoside metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0042393 histone binding IEP Predict GO terms from Neighborhoods
BP GO:0042454 ribonucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042554 superoxide anion generation IEP Predict GO terms from Neighborhoods
BP GO:0042766 obsolete nucleosome mobilization IEP Predict GO terms from Neighborhoods
MF GO:0042799 histone methyltransferase activity (H4-K20 specific) IEP Predict GO terms from Neighborhoods
MF GO:0042974 nuclear retinoic acid receptor binding IEP Predict GO terms from Neighborhoods
CC GO:0043033 isoamylase complex IEP Predict GO terms from Neighborhoods
CC GO:0043036 starch grain IEP Predict GO terms from Neighborhoods
MF GO:0043138 3'-5' DNA helicase activity IEP Predict GO terms from Neighborhoods
BP GO:0043383 negative T cell selection IEP Predict GO terms from Neighborhoods
MF GO:0043546 molybdopterin cofactor binding IEP Predict GO terms from Neighborhoods
CC GO:0043590 bacterial nucleoid IEP Predict GO terms from Neighborhoods
BP GO:0044806 G-quadruplex DNA unwinding IEP Predict GO terms from Neighborhoods
CC GO:0044815 DNA packaging complex IEP Predict GO terms from Neighborhoods
BP GO:0045040 protein insertion into mitochondrial outer membrane IEP Predict GO terms from Neighborhoods
BP GO:0045058 T cell selection IEP Predict GO terms from Neighborhoods
BP GO:0045060 negative thymic T cell selection IEP Predict GO terms from Neighborhoods
BP GO:0045061 thymic T cell selection IEP Predict GO terms from Neighborhoods
BP GO:0045875 negative regulation of sister chromatid cohesion IEP Predict GO terms from Neighborhoods
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0046011 regulation of oskar mRNA translation IEP Predict GO terms from Neighborhoods
BP GO:0046098 guanine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046100 hypoxanthine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046110 xanthine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046113 nucleobase catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046121 deoxyribonucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046122 purine deoxyribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046124 purine deoxyribonucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046128 purine ribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046130 purine ribonucleoside catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0046332 SMAD binding IEP Predict GO terms from Neighborhoods
BP GO:0046386 deoxyribose phosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046835 carbohydrate phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0046898 response to cycloheximide IEP Predict GO terms from Neighborhoods
MF GO:0046965 nuclear retinoid X receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0046966 nuclear thyroid hormone receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0046975 histone methyltransferase activity (H3-K36 specific) IEP Predict GO terms from Neighborhoods
BP GO:0048864 stem cell development IEP Predict GO terms from Neighborhoods
MF GO:0050421 nitrite reductase (NO-forming) activity IEP Predict GO terms from Neighborhoods
MF GO:0050681 nuclear androgen receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0051204 protein insertion into mitochondrial membrane IEP Predict GO terms from Neighborhoods
BP GO:0051205 protein insertion into membrane IEP Predict GO terms from Neighborhoods
MF GO:0051880 G-quadruplex DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0060135 maternal process involved in female pregnancy IEP Predict GO terms from Neighborhoods
BP GO:0060542 regulation of strand invasion IEP Predict GO terms from Neighborhoods
MF GO:0061628 H3K27me3 modified histone binding IEP Predict GO terms from Neighborhoods
MF GO:0061749 forked DNA-dependent helicase activity IEP Predict GO terms from Neighborhoods
BP GO:0061820 telomeric D-loop disassembly IEP Predict GO terms from Neighborhoods
MF GO:0061821 telomeric D-loop binding IEP Predict GO terms from Neighborhoods
MF GO:0061849 telomeric G-quadruplex DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0062037 D-loop DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0070336 flap-structured DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0070337 3'-flap-structured DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0070410 co-SMAD binding IEP Predict GO terms from Neighborhoods
MF GO:0070412 R-SMAD binding IEP Predict GO terms from Neighborhoods
BP GO:0070555 response to interleukin-1 IEP Predict GO terms from Neighborhoods
MF GO:0070577 lysine-acetylated histone binding IEP Predict GO terms from Neighborhoods
CC GO:0070822 Sin3-type complex IEP Predict GO terms from Neighborhoods
CC GO:0071006 U2-type catalytic step 1 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071012 catalytic step 1 spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071217 cellular response to external biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071347 cellular response to interleukin-1 IEP Predict GO terms from Neighborhoods
BP GO:0071356 cellular response to tumor necrosis factor IEP Predict GO terms from Neighborhoods
BP GO:0071480 cellular response to gamma radiation IEP Predict GO terms from Neighborhoods
BP GO:0071675 regulation of mononuclear cell migration IEP Predict GO terms from Neighborhoods
BP GO:0071922 regulation of cohesin loading IEP Predict GO terms from Neighborhoods
BP GO:0071923 negative regulation of cohesin loading IEP Predict GO terms from Neighborhoods
BP GO:0072523 purine-containing compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090101 negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP Predict GO terms from Neighborhoods
BP GO:0090288 negative regulation of cellular response to growth factor stimulus IEP Predict GO terms from Neighborhoods
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
BP GO:0090399 replicative senescence IEP Predict GO terms from Neighborhoods
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
CC GO:0090545 CHD-type complex IEP Predict GO terms from Neighborhoods
BP GO:0090656 t-circle formation IEP Predict GO terms from Neighborhoods
BP GO:0090657 telomeric loop disassembly IEP Predict GO terms from Neighborhoods
BP GO:0097184 response to azide IEP Predict GO terms from Neighborhoods
BP GO:0097536 thymus epithelium morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0098530 positive regulation of strand invasion IEP Predict GO terms from Neighborhoods
CC GO:0098687 chromosomal region IEP Predict GO terms from Neighborhoods
CC GO:0098799 outer mitochondrial membrane protein complex IEP Predict GO terms from Neighborhoods
MF GO:0098809 nitrite reductase activity IEP Predict GO terms from Neighborhoods
MF GO:0106345 glyoxylate reductase activity IEP Predict GO terms from Neighborhoods
BP GO:0120186 negative regulation of protein localization to chromatin IEP Predict GO terms from Neighborhoods
MF GO:0140030 modification-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140033 acetylation-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140034 methylation-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140666 annealing activity IEP Predict GO terms from Neighborhoods
BP GO:1901798 positive regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1901985 positive regulation of protein acetylation IEP Predict GO terms from Neighborhoods
BP GO:1902570 protein localization to nucleolus IEP Predict GO terms from Neighborhoods
BP GO:1903025 regulation of RNA polymerase II regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
BP GO:1903684 regulation of border follicle cell migration IEP Predict GO terms from Neighborhoods
BP GO:1903688 positive regulation of border follicle cell migration IEP Predict GO terms from Neighborhoods
BP GO:1903844 regulation of cellular response to transforming growth factor beta stimulus IEP Predict GO terms from Neighborhoods
BP GO:1905634 regulation of protein localization to chromatin IEP Predict GO terms from Neighborhoods
MF GO:1905773 8-hydroxy-2'-deoxyguanosine DNA binding IEP Predict GO terms from Neighborhoods
MF GO:1990814 DNA/DNA annealing activity IEP Predict GO terms from Neighborhoods
BP GO:2000145 regulation of cell motility IEP Predict GO terms from Neighborhoods
BP GO:2000401 regulation of lymphocyte migration IEP Predict GO terms from Neighborhoods
BP GO:2000404 regulation of T cell migration IEP Predict GO terms from Neighborhoods
BP GO:2000410 regulation of thymocyte migration IEP Predict GO terms from Neighborhoods
BP GO:2000677 regulation of transcription regulatory region DNA binding IEP Predict GO terms from Neighborhoods
BP GO:2000758 positive regulation of peptidyl-lysine acetylation IEP Predict GO terms from Neighborhoods
BP GO:2000896 amylopectin metabolic process IEP Predict GO terms from Neighborhoods

No InterPro domains available for this sequence

No external refs found!