| BP | GO:0000002 | mitochondrial genome maintenance | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000095 | S-adenosyl-L-methionine transmembrane transporter activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000372 | Group I intron splicing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000373 | Group II intron splicing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000376 | RNA splicing, via transesterification reactions with guanosine as nucleophile | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000427 | plastid-encoded plastid RNA polymerase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000959 | mitochondrial RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000963 | mitochondrial RNA processing | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003676 | nucleic acid binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003725 | double-stranded RNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003727 | single-stranded RNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003729 | mRNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003844 | 1,4-alpha-glucan branching enzyme activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003917 | DNA topoisomerase type I (single strand cut, ATP-independent) activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004386 | helicase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004396 | hexokinase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004518 | nuclease activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004525 | ribonuclease III activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005381 | iron ion transmembrane transporter activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005622 | intracellular anatomical structure | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005739 | mitochondrion | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005745 | m-AAA complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0005977 | glycogen metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0005978 | glycogen biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006000 | fructose metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006112 | energy reserve metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006259 | DNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006264 | mitochondrial DNA replication | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006265 | DNA topological change | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006397 | mRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008380 | RNA splicing | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008865 | fructokinase activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009295 | nucleoid | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009501 | amyloplast | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009507 | chloroplast | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009532 | plastid stroma | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009534 | chloroplast thylakoid | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009536 | plastid | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009570 | chloroplast stroma | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009579 | thylakoid | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009643 | photosynthetic acclimation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009662 | etioplast organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010021 | amylopectin biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010239 | chloroplast mRNA processing | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0010319 | stromule | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010343 | singlet oxygen-mediated programmed cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010467 | gene expression | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0015101 | organic cation transmembrane transporter activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0015386 | potassium:proton antiporter activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0015503 | glutathione-regulated potassium exporter activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0015643 | toxic substance binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0015695 | organic cation transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0015805 | S-adenosyl-L-methionine transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016071 | mRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016075 | rRNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016465 | chaperonin ATPase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016556 | mRNA modification | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016853 | isomerase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016881 | acid-amino acid ligase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0017038 | protein import | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0019200 | carbohydrate kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019252 | starch biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019684 | photosynthesis, light reaction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0022821 | solute:potassium antiporter activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030428 | cell septum | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031426 | polycistronic mRNA processing | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031976 | plastid thylakoid | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032042 | mitochondrial DNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0032977 | membrane insertase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033258 | plastid DNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033259 | plastid DNA replication | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0034061 | DNA polymerase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0034335 | DNA negative supercoiling activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034661 | ncRNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034982 | mitochondrial protein processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0036473 | cell death in response to oxidative stress | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042026 | protein refolding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0042644 | chloroplast nucleoid | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0042646 | plastid nucleoid | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042793 | plastid transcription | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044085 | cellular component biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044743 | protein transmembrane import into intracellular organelle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045038 | protein import into chloroplast thylakoid membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0051139 | metal cation:proton antiporter activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051205 | protein insertion into membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051276 | chromosome organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051291 | protein heterooligomerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051595 | response to methylglyoxal | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0062039 | biofilm matrix | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0062040 | fungal biofilm matrix | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070206 | protein trimerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070208 | protein heterotrimerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071103 | DNA conformation change | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071324 | cellular response to disaccharide stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071329 | cellular response to sucrose stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071332 | cellular response to fructose stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080093 | regulation of photorespiration | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090305 | nucleic acid phosphodiester bond hydrolysis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090342 | obsolete regulation of cell aging | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090615 | mitochondrial mRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0097468 | programmed cell death in response to reactive oxygen species | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0098662 | inorganic cation transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0101031 | chaperone complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0102752 | 1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis) | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0140040 | mitochondrial polycistronic RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0140053 | mitochondrial gene expression | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140104 | molecular carrier activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140597 | protein carrier chaperone | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140828 | metal cation:monoatomic cation antiporter activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900871 | chloroplast mRNA modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901962 | S-adenosyl-L-methionine transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904821 | chloroplast disassembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1905157 | positive regulation of photosynthesis | IEP | Predict GO terms from Neighborhoods |
| CC | GO:1990220 | GroEL-GroES complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000896 | amylopectin metabolic process | IEP | Predict GO terms from Neighborhoods |