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  5. SOLTUB.AGRIA.G00000034548

SOLTUB.AGRIA.G00000034548


Description : F-box protein


Gene families : OG_02_0002693 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000034548
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_17


Type GO Term Name Evidence Source
MF GO:0005488 binding IEA AHRD
CC GO:0005622 intracellular anatomical structure IEA AHRD
BP GO:0009793 embryo development ending in seed dormancy IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEP Predict GO terms from Neighborhoods
MF GO:0000900 mRNA regulatory element binding translation repressor activity IEP Predict GO terms from Neighborhoods
BP GO:0001555 oocyte growth IEP Predict GO terms from Neighborhoods
BP GO:0001556 oocyte maturation IEP Predict GO terms from Neighborhoods
BP GO:0001704 formation of primary germ layer IEP Predict GO terms from Neighborhoods
MF GO:0003730 mRNA 3'-UTR binding IEP Predict GO terms from Neighborhoods
MF GO:0004021 L-alanine:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004838 L-tyrosine:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0005789 endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
CC GO:0005819 spindle IEP Predict GO terms from Neighborhoods
BP GO:0007289 spermatid nucleus differentiation IEP Predict GO terms from Neighborhoods
BP GO:0007389 pattern specification process IEP Predict GO terms from Neighborhoods
BP GO:0007596 blood coagulation IEP Predict GO terms from Neighborhoods
BP GO:0007599 hemostasis IEP Predict GO terms from Neighborhoods
MF GO:0008171 O-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008483 transaminase activity IEP Predict GO terms from Neighborhoods
MF GO:0008494 translation activator activity IEP Predict GO terms from Neighborhoods
MF GO:0008793 aromatic-amino-acid:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0009606 tropism IEP Predict GO terms from Neighborhoods
BP GO:0009629 response to gravity IEP Predict GO terms from Neighborhoods
BP GO:0009630 gravitropism IEP Predict GO terms from Neighborhoods
BP GO:0009641 shade avoidance IEP Predict GO terms from Neighborhoods
BP GO:0009683 indoleacetic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009684 indoleacetic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009723 response to ethylene IEP Predict GO terms from Neighborhoods
BP GO:0009742 brassinosteroid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009850 auxin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009851 auxin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009888 tissue development IEP Predict GO terms from Neighborhoods
BP GO:0009900 dehiscence IEP Predict GO terms from Neighborhoods
BP GO:0009901 anther dehiscence IEP Predict GO terms from Neighborhoods
BP GO:0009914 hormone transport IEP Predict GO terms from Neighborhoods
BP GO:0009926 auxin polar transport IEP Predict GO terms from Neighborhoods
BP GO:0009958 positive gravitropism IEP Predict GO terms from Neighborhoods
BP GO:0010051 xylem and phloem pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010074 maintenance of meristem identity IEP Predict GO terms from Neighborhoods
BP GO:0010078 maintenance of root meristem identity IEP Predict GO terms from Neighborhoods
MF GO:0010326 methionine-oxo-acid transaminase activity IEP Predict GO terms from Neighborhoods
MF GO:0010340 carboxyl-O-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0010341 gibberellin carboxyl-O-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0010588 cotyledon vascular tissue pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010600 regulation of auxin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010608 post-transcriptional regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010817 regulation of hormone levels IEP Predict GO terms from Neighborhoods
BP GO:0016053 organic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016441 post-transcriptional gene silencing IEP Predict GO terms from Neighborhoods
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predict GO terms from Neighborhoods
MF GO:0016829 lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016830 carbon-carbon lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016831 carboxy-lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predict GO terms from Neighborhoods
MF GO:0016846 carbon-sulfur lyase activity IEP Predict GO terms from Neighborhoods
CC GO:0017117 single-stranded DNA-dependent ATP-dependent DNA helicase complex IEP Predict GO terms from Neighborhoods
BP GO:0017148 negative regulation of translation IEP Predict GO terms from Neighborhoods
MF GO:0019010 farnesoic acid O-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0019827 stem cell population maintenance IEP Predict GO terms from Neighborhoods
MF GO:0019842 vitamin binding IEP Predict GO terms from Neighborhoods
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predict GO terms from Neighborhoods
MF GO:0030170 pyridoxal phosphate binding IEP Predict GO terms from Neighborhoods
BP GO:0030397 membrane disassembly IEP Predict GO terms from Neighborhoods
MF GO:0030570 pectate lyase activity IEP Predict GO terms from Neighborhoods
BP GO:0030707 ovarian follicle cell development IEP Predict GO terms from Neighborhoods
MF GO:0030749 loganate O-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0031047 gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0031063 regulation of histone deacetylation IEP Predict GO terms from Neighborhoods
BP GO:0031064 negative regulation of histone deacetylation IEP Predict GO terms from Neighborhoods
BP GO:0031138 negative regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
BP GO:0031139 positive regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
MF GO:0031370 eukaryotic initiation factor 4G binding IEP Predict GO terms from Neighborhoods
MF GO:0031404 chloride ion binding IEP Predict GO terms from Neighborhoods
BP GO:0031952 regulation of protein autophosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0032069 regulation of nuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0032075 positive regulation of nuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0032350 regulation of hormone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033077 T cell differentiation in thymus IEP Predict GO terms from Neighborhoods
CC GO:0033202 DNA helicase complex IEP Predict GO terms from Neighborhoods
BP GO:0033674 positive regulation of kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034754 cellular hormone metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0034973 Sid2-Mob1 complex IEP Predict GO terms from Neighborhoods
BP GO:0035019 somatic stem cell population maintenance IEP Predict GO terms from Neighborhoods
BP GO:0035194 post-transcriptional gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0035195 miRNA-mediated gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0035265 organ growth IEP Predict GO terms from Neighborhoods
BP GO:0035330 regulation of hippo signaling IEP Predict GO terms from Neighborhoods
BP GO:0035834 indole alkaloid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042254 ribosome biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0042430 indole-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042435 indole-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042445 hormone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042446 hormone biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0043223 cytoplasmic SCF ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
BP GO:0043401 steroid hormone mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0043406 positive regulation of MAP kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0043487 regulation of RNA stability IEP Predict GO terms from Neighborhoods
BP GO:0043488 regulation of mRNA stability IEP Predict GO terms from Neighborhoods
BP GO:0043562 cellular response to nitrogen levels IEP Predict GO terms from Neighborhoods
BP GO:0044085 cellular component biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0044091 membrane biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0044344 cellular response to fibroblast growth factor stimulus IEP Predict GO terms from Neighborhoods
MF GO:0044692 exoribonuclease activator activity IEP Predict GO terms from Neighborhoods
BP GO:0045577 regulation of B cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045598 regulation of fat cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045599 negative regulation of fat cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045930 negative regulation of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0046394 carboxylic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046885 regulation of hormone biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0047312 L-phenylalanine:pyruvate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0047434 indolepyruvate decarboxylase activity IEP Predict GO terms from Neighborhoods
MF GO:0047635 alanine-oxo-acid transaminase activity IEP Predict GO terms from Neighborhoods
MF GO:0047654 alliin lyase activity IEP Predict GO terms from Neighborhoods
BP GO:0048103 somatic stem cell division IEP Predict GO terms from Neighborhoods
BP GO:0048364 root development IEP Predict GO terms from Neighborhoods
BP GO:0048438 floral whorl development IEP Predict GO terms from Neighborhoods
BP GO:0048467 gynoecium development IEP Predict GO terms from Neighborhoods
BP GO:0048527 lateral root development IEP Predict GO terms from Neighborhoods
BP GO:0048528 post-embryonic root development IEP Predict GO terms from Neighborhoods
BP GO:0048599 oocyte development IEP Predict GO terms from Neighborhoods
BP GO:0048601 oocyte morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:0050048 L-leucine:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0050362 L-tryptophan:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0050817 coagulation IEP Predict GO terms from Neighborhoods
BP GO:0051078 meiotic nuclear membrane disassembly IEP Predict GO terms from Neighborhoods
BP GO:0051081 nuclear membrane disassembly IEP Predict GO terms from Neighborhoods
BP GO:0051347 positive regulation of transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051447 negative regulation of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening IEP Predict GO terms from Neighborhoods
BP GO:0060212 negative regulation of nuclear-transcribed mRNA poly(A) tail shortening IEP Predict GO terms from Neighborhoods
BP GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEP Predict GO terms from Neighborhoods
BP GO:0060216 definitive hemopoiesis IEP Predict GO terms from Neighborhoods
BP GO:0060278 regulation of ovulation IEP Predict GO terms from Neighborhoods
BP GO:0060280 negative regulation of ovulation IEP Predict GO terms from Neighborhoods
BP GO:0060281 regulation of oocyte development IEP Predict GO terms from Neighborhoods
BP GO:0060282 positive regulation of oocyte development IEP Predict GO terms from Neighborhoods
BP GO:0060918 auxin transport IEP Predict GO terms from Neighborhoods
BP GO:0061013 regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0061014 positive regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0061158 3'-UTR-mediated mRNA destabilization IEP Predict GO terms from Neighborhoods
MF GO:0062104 pumilio-response element binding IEP Predict GO terms from Neighborhoods
MF GO:0070279 vitamin B6 binding IEP Predict GO terms from Neighborhoods
BP GO:0070371 ERK1 and ERK2 cascade IEP Predict GO terms from Neighborhoods
MF GO:0070529 L-tryptophan aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0070546 L-phenylalanine aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0070547 L-tyrosine aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0070548 L-glutamine aminotransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0070849 response to epidermal growth factor IEP Predict GO terms from Neighborhoods
BP GO:0071168 protein localization to chromatin IEP Predict GO terms from Neighborhoods
BP GO:0071364 cellular response to epidermal growth factor stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071559 response to transforming growth factor beta IEP Predict GO terms from Neighborhoods
BP GO:0071560 cellular response to transforming growth factor beta stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071774 response to fibroblast growth factor IEP Predict GO terms from Neighborhoods
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0080022 primary root development IEP Predict GO terms from Neighborhoods
BP GO:0080027 response to herbivore IEP Predict GO terms from Neighborhoods
MF GO:0080097 L-tryptophan:pyruvate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0080098 L-tyrosine:pyruvate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0080099 L-methionine:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0080100 L-glutamine:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0080130 L-phenylalanine:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0080154 regulation of fertilization IEP Predict GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Predict GO terms from Neighborhoods
BP GO:0090354 regulation of auxin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090696 post-embryonic plant organ development IEP Predict GO terms from Neighborhoods
BP GO:0097011 cellular response to granulocyte macrophage colony-stimulating factor stimulus IEP Predict GO terms from Neighborhoods
BP GO:0097012 response to granulocyte macrophage colony-stimulating factor IEP Predict GO terms from Neighborhoods
BP GO:0098727 maintenance of cell number IEP Predict GO terms from Neighborhoods
BP GO:0101025 nuclear membrane biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0101026 mitotic nuclear membrane biogenesis IEP Predict GO terms from Neighborhoods
MF GO:0103075 indole-3-pyruvate monooxygenase activity IEP Predict GO terms from Neighborhoods
BP GO:0110044 regulation of cell cycle switching, mitotic to meiotic cell cycle IEP Predict GO terms from Neighborhoods
MF GO:0140313 molecular sequestering activity IEP Predict GO terms from Neighborhoods
MF GO:0140610 RNA sequestering activity IEP Predict GO terms from Neighborhoods
BP GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEP Predict GO terms from Neighborhoods
BP GO:1900152 negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEP Predict GO terms from Neighborhoods
BP GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEP Predict GO terms from Neighborhoods
BP GO:1900193 regulation of oocyte maturation IEP Predict GO terms from Neighborhoods
BP GO:1900194 negative regulation of oocyte maturation IEP Predict GO terms from Neighborhoods
BP GO:1900195 positive regulation of oocyte maturation IEP Predict GO terms from Neighborhoods
BP GO:1901988 negative regulation of cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1903313 positive regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903429 regulation of cell maturation IEP Predict GO terms from Neighborhoods
BP GO:1903430 negative regulation of cell maturation IEP Predict GO terms from Neighborhoods
BP GO:1903431 positive regulation of cell maturation IEP Predict GO terms from Neighborhoods
BP GO:1903538 regulation of meiotic cell cycle process involved in oocyte maturation IEP Predict GO terms from Neighborhoods
BP GO:1904145 negative regulation of meiotic cell cycle process involved in oocyte maturation IEP Predict GO terms from Neighborhoods
BP GO:1904146 positive regulation of meiotic cell cycle process involved in oocyte maturation IEP Predict GO terms from Neighborhoods
BP GO:1905516 positive regulation of fertilization IEP Predict GO terms from Neighborhoods
BP GO:1905615 positive regulation of developmental vegetative growth IEP Predict GO terms from Neighborhoods
MF GO:1905762 CCR4-NOT complex binding IEP Predict GO terms from Neighborhoods
BP GO:1905879 regulation of oogenesis IEP Predict GO terms from Neighborhoods
CC GO:1990124 messenger ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
MF GO:1990444 F-box domain binding IEP Predict GO terms from Neighborhoods
BP GO:2000024 regulation of leaf development IEP Predict GO terms from Neighborhoods
BP GO:2000280 regulation of root development IEP Predict GO terms from Neighborhoods
BP GO:2000468 regulation of peroxidase activity IEP Predict GO terms from Neighborhoods
BP GO:2000469 negative regulation of peroxidase activity IEP Predict GO terms from Neighborhoods
BP GO:2000622 regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predict GO terms from Neighborhoods
BP GO:2000623 negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predict GO terms from Neighborhoods
BP GO:2000737 negative regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR025886 PP2-like 108 328
IPR036047 F-box-like_dom_sf 12 112
IPR001810 F-box_dom 14 57
No external refs found!