SOLTUB.AGRIA.G00000035610


Description : UBP1-associated protein 2A


Gene families : OG_02_0010951 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000035610
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_254


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA AHRD
MF GO:0003730 mRNA 3'-UTR binding IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005737 cytoplasm IEA AHRD
BP GO:0006396 RNA processing IEA AHRD
BP GO:0006952 defense response IEA AHRD
BP GO:0008219 cell death IEA AHRD
BP GO:0009693 ethylene biosynthetic process IEA AHRD
BP GO:0010035 response to inorganic substance IEA AHRD
BP GO:0010150 leaf senescence IEA AHRD
BP GO:0010243 response to organonitrogen compound IEA AHRD
BP GO:0010628 positive regulation of gene expression IEA AHRD
BP GO:0010830 regulation of myotube differentiation IEA AHRD
BP GO:0014070 response to organic cyclic compound IEA AHRD
BP GO:0017148 negative regulation of translation IEA AHRD
BP GO:0032204 regulation of telomere maintenance IEA AHRD
BP GO:0033993 response to lipid IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
BP GO:0043488 regulation of mRNA stability IEA AHRD
BP GO:0045597 positive regulation of cell differentiation IEA AHRD
BP GO:0045893 positive regulation of DNA-templated transcription IEA AHRD
BP GO:0048511 rhythmic process IEA AHRD
BP GO:0048513 animal organ development IEA AHRD
BP GO:0051028 mRNA transport IEA AHRD
MF GO:0070717 poly-purine tract binding IEA AHRD
BP GO:0071310 cellular response to organic substance IEA AHRD
BP GO:0071495 cellular response to endogenous stimulus IEA AHRD
BP GO:1901699 cellular response to nitrogen compound IEA AHRD
BP GO:1901701 cellular response to oxygen-containing compound IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000243 commitment complex IEP Predict GO terms from Neighborhoods
BP GO:0000245 spliceosomal complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predict GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predict GO terms from Neighborhoods
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0000922 spindle pole IEP Predict GO terms from Neighborhoods
MF GO:0000993 RNA polymerase II complex binding IEP Predict GO terms from Neighborhoods
MF GO:0001098 basal transcription machinery binding IEP Predict GO terms from Neighborhoods
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP Predict GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0001570 vasculogenesis IEP Predict GO terms from Neighborhoods
BP GO:0001676 long-chain fatty acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0001833 inner cell mass cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0002097 tRNA wobble base modification IEP Predict GO terms from Neighborhoods
BP GO:0002098 tRNA wobble uridine modification IEP Predict GO terms from Neighborhoods
BP GO:0002244 hematopoietic progenitor cell differentiation IEP Predict GO terms from Neighborhoods
CC GO:0005684 U2-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005689 U12-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005811 lipid droplet IEP Predict GO terms from Neighborhoods
BP GO:0006400 tRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0006996 organelle organization IEP Predict GO terms from Neighborhoods
BP GO:0007010 cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0007051 spindle organization IEP Predict GO terms from Neighborhoods
BP GO:0007052 mitotic spindle organization IEP Predict GO terms from Neighborhoods
BP GO:0007272 ensheathment of neurons IEP Predict GO terms from Neighborhoods
BP GO:0007281 germ cell development IEP Predict GO terms from Neighborhoods
BP GO:0007286 spermatid development IEP Predict GO terms from Neighborhoods
BP GO:0007420 brain development IEP Predict GO terms from Neighborhoods
BP GO:0007519 skeletal muscle tissue development IEP Predict GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Predict GO terms from Neighborhoods
MF GO:0008187 poly-pyrimidine tract binding IEP Predict GO terms from Neighborhoods
MF GO:0008266 poly(U) RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0008283 cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0008366 axon ensheathment IEP Predict GO terms from Neighborhoods
BP GO:0008589 regulation of smoothened signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009888 tissue development IEP Predict GO terms from Neighborhoods
BP GO:0009910 negative regulation of flower development IEP Predict GO terms from Neighborhoods
BP GO:0009933 meristem structural organization IEP Predict GO terms from Neighborhoods
BP GO:0010449 root meristem growth IEP Predict GO terms from Neighborhoods
BP GO:0010656 negative regulation of muscle cell apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0010660 regulation of muscle cell apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0010662 regulation of striated muscle cell apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0010664 negative regulation of striated muscle cell apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0010665 regulation of cardiac muscle cell apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0010667 negative regulation of cardiac muscle cell apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0010720 positive regulation of cell development IEP Predict GO terms from Neighborhoods
BP GO:0010975 regulation of neuron projection development IEP Predict GO terms from Neighborhoods
BP GO:0010976 positive regulation of neuron projection development IEP Predict GO terms from Neighborhoods
BP GO:0014013 regulation of gliogenesis IEP Predict GO terms from Neighborhoods
BP GO:0014015 positive regulation of gliogenesis IEP Predict GO terms from Neighborhoods
BP GO:0014028 notochord formation IEP Predict GO terms from Neighborhoods
BP GO:0014866 skeletal myofibril assembly IEP Predict GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0016477 cell migration IEP Predict GO terms from Neighborhoods
CC GO:0016593 Cdc73/Paf1 complex IEP Predict GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
BP GO:0030029 actin filament-based process IEP Predict GO terms from Neighborhoods
BP GO:0030036 actin cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0030239 myofibril assembly IEP Predict GO terms from Neighborhoods
BP GO:0030282 bone mineralization IEP Predict GO terms from Neighborhoods
BP GO:0030433 ubiquitin-dependent ERAD pathway IEP Predict GO terms from Neighborhoods
BP GO:0030488 tRNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0030595 leukocyte chemotaxis IEP Predict GO terms from Neighborhoods
MF GO:0030628 pre-mRNA 3'-splice site binding IEP Predict GO terms from Neighborhoods
MF GO:0030674 protein-macromolecule adaptor activity IEP Predict GO terms from Neighborhoods
BP GO:0030970 retrograde protein transport, ER to cytosol IEP Predict GO terms from Neighborhoods
BP GO:0031032 actomyosin structure organization IEP Predict GO terms from Neighborhoods
CC GO:0031143 pseudopodium IEP Predict GO terms from Neighborhoods
BP GO:0031214 biomineral tissue development IEP Predict GO terms from Neighborhoods
BP GO:0031330 negative regulation of cellular catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031346 positive regulation of cell projection organization IEP Predict GO terms from Neighborhoods
MF GO:0032182 ubiquitin-like protein binding IEP Predict GO terms from Neighborhoods
BP GO:0032527 protein exit from endoplasmic reticulum IEP Predict GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Predict GO terms from Neighborhoods
CC GO:0033588 elongator holoenzyme complex IEP Predict GO terms from Neighborhoods
CC GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex IEP Predict GO terms from Neighborhoods
BP GO:0034389 lipid droplet organization IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035266 meristem growth IEP Predict GO terms from Neighborhoods
MF GO:0035473 lipase binding IEP Predict GO terms from Neighborhoods
MF GO:0036002 pre-mRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0036503 ERAD pathway IEP Predict GO terms from Neighborhoods
BP GO:0042255 ribosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0042256 mature ribosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0042552 myelination IEP Predict GO terms from Neighborhoods
BP GO:0042759 long-chain fatty acid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0043021 ribonucleoprotein complex binding IEP Predict GO terms from Neighborhoods
MF GO:0043022 ribosome binding IEP Predict GO terms from Neighborhoods
MF GO:0043130 ubiquitin binding IEP Predict GO terms from Neighborhoods
MF GO:0043175 RNA polymerase core enzyme binding IEP Predict GO terms from Neighborhoods
BP GO:0043484 regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0043489 RNA stabilization IEP Predict GO terms from Neighborhoods
BP GO:0045292 mRNA cis splicing, via spliceosome IEP Predict GO terms from Neighborhoods
MF GO:0045309 protein phosphorylated amino acid binding IEP Predict GO terms from Neighborhoods
BP GO:0045685 regulation of glial cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045687 positive regulation of glial cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0048255 mRNA stabilization IEP Predict GO terms from Neighborhoods
BP GO:0048532 anatomical structure arrangement IEP Predict GO terms from Neighborhoods
BP GO:0048534 hematopoietic or lymphoid organ development IEP Predict GO terms from Neighborhoods
BP GO:0048539 bone marrow development IEP Predict GO terms from Neighborhoods
BP GO:0048577 negative regulation of short-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048579 negative regulation of long-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048580 regulation of post-embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0048581 negative regulation of post-embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0048586 regulation of long-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048587 regulation of short-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048713 regulation of oligodendrocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0048714 positive regulation of oligodendrocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0048870 cell motility IEP Predict GO terms from Neighborhoods
BP GO:0050684 regulation of mRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0050733 RS domain binding IEP Predict GO terms from Neighborhoods
BP GO:0050767 regulation of neurogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050769 positive regulation of neurogenesis IEP Predict GO terms from Neighborhoods
MF GO:0050815 phosphoserine residue binding IEP Predict GO terms from Neighborhoods
BP GO:0050900 leukocyte migration IEP Predict GO terms from Neighborhoods
BP GO:0051093 negative regulation of developmental process IEP Predict GO terms from Neighborhoods
MF GO:0051219 phosphoprotein binding IEP Predict GO terms from Neighborhoods
BP GO:0051241 negative regulation of multicellular organismal process IEP Predict GO terms from Neighborhoods
BP GO:0051960 regulation of nervous system development IEP Predict GO terms from Neighborhoods
BP GO:0051962 positive regulation of nervous system development IEP Predict GO terms from Neighborhoods
MF GO:0055102 lipase inhibitor activity IEP Predict GO terms from Neighborhoods
BP GO:0060034 notochord cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0060326 cell chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0060537 muscle tissue development IEP Predict GO terms from Neighborhoods
MF GO:0070063 RNA polymerase binding IEP Predict GO terms from Neighborhoods
BP GO:0070925 organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:0070935 3'-UTR-mediated mRNA stabilization IEP Predict GO terms from Neighborhoods
CC GO:0071004 U2-type prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071010 prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071013 catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0080178 5-carbamoylmethyl uridine residue modification IEP Predict GO terms from Neighborhoods
CC GO:0089701 U2AF complex IEP Predict GO terms from Neighborhoods
MF GO:0099122 RNA polymerase II C-terminal domain binding IEP Predict GO terms from Neighborhoods
BP GO:0110148 biomineralization IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:0140694 non-membrane-bounded organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:1902369 negative regulation of RNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902373 negative regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902850 microtubule cytoskeleton organization involved in mitosis IEP Predict GO terms from Neighborhoods
BP GO:1903008 organelle disassembly IEP Predict GO terms from Neighborhoods
BP GO:1903312 negative regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903513 endoplasmic reticulum to cytosol transport IEP Predict GO terms from Neighborhoods
BP GO:1905691 lipid droplet disassembly IEP Predict GO terms from Neighborhoods
MF GO:1990269 RNA polymerase II C-terminal domain phosphoserine binding IEP Predict GO terms from Neighborhoods
BP GO:2000241 regulation of reproductive process IEP Predict GO terms from Neighborhoods
BP GO:2000242 negative regulation of reproductive process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000504 RRM_dom 203 270
IPR000504 RRM_dom 114 181
IPR035979 RBD_domain_sf 102 189
IPR035979 RBD_domain_sf 196 296
No external refs found!