SOLTUB.AGRIA.G00000041169

Description : ATP-dependent zinc metalloprotease FtsH

Gene families : OG_02_0017546 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000041169
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_130

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004176	ATP-dependent peptidase activity	IEA	AHRD
MF	GO:0004222	metalloendopeptidase activity	IEA	AHRD
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006508	proteolysis	IEA	AHRD
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0008320	protein transmembrane transporter activity	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009523	photosystem II	IEA	AHRD
CC	GO:0009534	chloroplast thylakoid	IEA	AHRD
CC	GO:0009579	thylakoid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010206	photosystem II repair	IEA	AHRD
BP	GO:0015031	protein transport	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015450	protein-transporting ATPase activity	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0016021	integral component of membrane	IEA	AHRD
MF	GO:0016464	chloroplast protein-transporting ATPase activity	IEA	AHRD
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022884	macromolecule transmembrane transporter activity	None	Extended
BP	GO:0030091	protein repair	None	Extended
BP	GO:0030163	protein catabolic process	IEA	AHRD
CC	GO:0030428	cell septum	IEA	AHRD
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031969	chloroplast membrane	IEA	AHRD
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
CC	GO:0042651	thylakoid membrane	IEA	AHRD
MF	GO:0042802	identical protein binding	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043934	sporulation	IEA	AHRD
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045036	protein targeting to chloroplast	None	Extended
BP	GO:0045037	protein import into chloroplast stroma	IEA	AHRD
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
CC	GO:0062091	Ycf2/FtsHi complex	IEA	AHRD
BP	GO:0065002	intracellular protein transmembrane transport	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071806	protein transmembrane transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072596	establishment of protein localization to chloroplast	None	Extended
BP	GO:0072598	protein localization to chloroplast	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140318	protein transporter activity	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1904949	ATPase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000372	Group I intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000373	Group II intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000376	RNA splicing, via transesterification reactions with guanosine as nucleophile	IEP	Predict GO terms from Neighborhoods
BP	GO:0001678	cellular glucose homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003844	1,4-alpha-glucan branching enzyme activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003916	DNA topoisomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005739	mitochondrion	IEP	Predict GO terms from Neighborhoods
CC	GO:0005745	m-AAA complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0005977	glycogen metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005978	glycogen biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005982	starch metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Predict GO terms from Neighborhoods
BP	GO:0006112	energy reserve metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006261	DNA-templated DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006264	mitochondrial DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006265	DNA topological change	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006458	'de novo' protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009501	amyloplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009526	plastid envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0009528	plastid inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009532	plastid stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009535	chloroplast thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009536	plastid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009570	chloroplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:0009657	plastid organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009658	chloroplast organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009668	plastid membrane organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0009706	chloroplast inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009750	response to fructose	IEP	Predict GO terms from Neighborhoods
CC	GO:0009941	chloroplast envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0010019	chloroplast-nucleus signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010020	chloroplast fission	IEP	Predict GO terms from Neighborhoods
BP	GO:0010021	amylopectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010027	thylakoid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010109	regulation of photosynthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010205	photoinhibition	IEP	Predict GO terms from Neighborhoods
CC	GO:0010319	stromule	IEP	Predict GO terms from Neighborhoods
BP	GO:0010467	gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0016465	chaperonin ATPase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0016485	protein processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019252	starch biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019684	photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0019725	cellular homeostasis	IEP	Predict GO terms from Neighborhoods
CC	GO:0019866	organelle inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031426	polycistronic mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031930	mitochondria-nucleus signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0031977	thylakoid lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032042	mitochondrial DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033258	plastid DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033259	plastid DNA replication	IEP	Predict GO terms from Neighborhoods
MF	GO:0034061	DNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0034335	DNA negative supercoiling activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034982	mitochondrial protein processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0042026	protein refolding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0042593	glucose homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0043155	negative regulation of photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0043572	plastid fission	IEP	Predict GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045454	cell redox homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048564	photosystem I assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051084	'de novo' post-translational protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051085	chaperone cofactor-dependent protein refolding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0055035	plastid thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0062039	biofilm matrix	IEP	Predict GO terms from Neighborhoods
CC	GO:0062040	fungal biofilm matrix	IEP	Predict GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Predict GO terms from Neighborhoods
BP	GO:0071322	cellular response to carbohydrate stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071324	cellular response to disaccharide stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071326	cellular response to monosaccharide stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071329	cellular response to sucrose stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071331	cellular response to hexose stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071332	cellular response to fructose stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071333	cellular response to glucose stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0071897	DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0080093	regulation of photorespiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0101031	chaperone complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0102752	1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis)	IEP	Predict GO terms from Neighborhoods
BP	GO:0140040	mitochondrial polycistronic RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0140053	mitochondrial gene expression	IEP	Predict GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:1905156	negative regulation of photosynthesis	IEP	Predict GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1990220	GroEL-GroES complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000896	amylopectin metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	437	569
IPR037219	Peptidase_M41-like	652	828
IPR041569	AAA_lid_3	592	634
IPR000642	Peptidase_M41	654	823
IPR027417	P-loop_NTPase	393	638

External Links

No external refs found!

SOLTUB.AGRIA.G00000041169

Expression Profile

Co-expression Networks

Functional Annotation