SOLTUB.AGRIA.G00000006250

Description : DNA glycosylase

Gene families : OG_02_0012789 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006250
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_134

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	None	Extended
MF	GO:0019104	DNA N-glycosylase activity	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000124	SAGA complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000159	protein phosphatase type 2A complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000226	microtubule cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0000245	spliceosomal complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000389	mRNA 3'-splice site recognition	IEP	Predict GO terms from Neighborhoods
CC	GO:0000791	euchromatin	IEP	Predict GO terms from Neighborhoods
BP	GO:0001959	regulation of cytokine-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0001961	positive regulation of cytokine-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0002052	positive regulation of neuroblast proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002753	cytoplasmic pattern recognition receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0003128	heart field specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0003139	secondary heart field specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0003207	cardiac chamber formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0003211	cardiac ventricle formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0003219	cardiac right ventricle formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0003407	neural retina development	IEP	Predict GO terms from Neighborhoods
MF	GO:0003712	transcription coregulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003713	transcription coactivator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003725	double-stranded RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005102	signaling receptor binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005669	transcription factor TFIID complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005686	U2 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006337	nucleosome disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0006376	mRNA splice site selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0007051	spindle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007052	mitotic spindle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007406	negative regulation of neuroblast proliferation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008134	transcription factor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008160	protein tyrosine phosphatase activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008285	negative regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0010092	specification of animal organ identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010498	proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010603	regulation of cytoplasmic mRNA processing body assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0010606	positive regulation of cytoplasmic mRNA processing body assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0010638	positive regulation of organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010721	negative regulation of cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010921	regulation of phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010922	positive regulation of phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010923	negative regulation of phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010976	positive regulation of neuron projection development	IEP	Predict GO terms from Neighborhoods
MF	GO:0016251	RNA polymerase II general transcription initiation factor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0016514	SWI/SNF complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0017025	TBP-class protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0017151	DEAD/H-box RNA helicase binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0019208	phosphatase regulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019211	phosphatase activator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019888	protein phosphatase regulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0030371	translation repressor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0030374	nuclear receptor coactivator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0031445	regulation of heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031453	positive regulation of heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032515	negative regulation of phosphoprotein phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032516	positive regulation of phosphoprotein phosphatase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0032586	protein storage vacuole membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032986	protein-DNA complex disassembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0033017	sarcoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0033276	transcription factor TFTC complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034063	stress granule assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0034702	ion channel complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034703	cation channel complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034704	calcium channel complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0035060	brahma complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0035305	negative regulation of dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035306	positive regulation of dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035307	positive regulation of protein dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035308	negative regulation of protein dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0039528	cytoplasmic pattern recognition receptor signaling pathway in response to virus	IEP	Predict GO terms from Neighborhoods
BP	GO:0039529	RIG-I signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0042692	muscle cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0042803	protein homodimerization activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0044325	transmembrane transporter binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0045292	mRNA cis splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0046695	SLIK (SAGA-like) complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0050768	negative regulation of neurogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050848	regulation of calcium-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0050850	positive regulation of calcium-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0051123	RNA polymerase II preinitiation complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051130	positive regulation of cellular component organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051209	release of sequestered calcium ion into cytosol	IEP	Predict GO terms from Neighborhoods
BP	GO:0051282	regulation of sequestering of calcium ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0051283	negative regulation of sequestering of calcium ion	IEP	Predict GO terms from Neighborhoods
MF	GO:0051721	protein phosphatase 2A binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051961	negative regulation of nervous system development	IEP	Predict GO terms from Neighborhoods
MF	GO:0060090	molecular adaptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060338	regulation of type I interferon-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0060340	positive regulation of type I interferon-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0060759	regulation of response to cytokine stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0060760	positive regulation of response to cytokine stimulus	IEP	Predict GO terms from Neighborhoods
MF	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0070461	SAGA-type complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0070884	regulation of calcineurin-NFAT signaling cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0070886	positive regulation of calcineurin-NFAT signaling cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0070897	transcription preinitiation complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0071004	U2-type prespliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071005	U2-type precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071010	prespliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071564	npBAF complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071565	nBAF complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071629	cytoplasm protein quality control by the ubiquitin-proteasome system	IEP	Predict GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0072542	protein phosphatase activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090307	mitotic spindle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0097553	calcium ion transmembrane import into cytosol	IEP	Predict GO terms from Neighborhoods
BP	GO:0098586	cellular response to virus	IEP	Predict GO terms from Neighborhoods
BP	GO:0106056	regulation of calcineurin-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0106058	positive regulation of calcineurin-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0110154	RNA decapping	IEP	Predict GO terms from Neighborhoods
BP	GO:0110156	methylguanosine-cap decapping	IEP	Predict GO terms from Neighborhoods
BP	GO:0120261	regulation of heterochromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0120263	positive regulation of heterochromatin organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0140223	general transcription initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140296	general transcription initiation factor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0140297	DNA-binding transcription factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0140455	cytoplasm protein quality control	IEP	Predict GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1902117	positive regulation of organelle assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1902692	regulation of neuroblast proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902850	microtubule cytoskeleton organization involved in mitosis	IEP	Predict GO terms from Neighborhoods
BP	GO:1903241	U2-type prespliceosome assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:1903293	phosphatase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1905269	positive regulation of chromatin organization	IEP	Predict GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1990124	messenger ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000024	regulation of leaf development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000177	regulation of neural precursor cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000178	negative regulation of neural precursor cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000179	positive regulation of neural precursor cell proliferation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003265	HhH-GPD_domain	149	292
IPR011257	DNA_glycosylase	138	309

External Links

No external refs found!

SOLTUB.AGRIA.G00000006250

Expression Profile

Co-expression Networks

Functional Annotation