SOLTUB.AGRIA.G00000006906


Description : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein


Gene families : OG_02_0012864 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006906
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_214


Type GO Term Name Evidence Source
BP GO:0000122 negative regulation of transcription by RNA polymerase II IEA AHRD
MF GO:0000976 transcription cis-regulatory region binding IEA AHRD
CC GO:0001650 fibrillar center IEA AHRD
BP GO:0002457 T cell antigen processing and presentation IEA AHRD
MF GO:0003700 DNA-binding transcription factor activity IEA AHRD
MF GO:0003713 transcription coactivator activity IEA AHRD
MF GO:0003714 transcription corepressor activity IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0006338 chromatin remodeling IEA AHRD
BP GO:0007338 single fertilization IEA AHRD
BP GO:0007526 larval somatic muscle development IEA AHRD
MF GO:0008198 ferrous iron binding IEA AHRD
MF GO:0008270 zinc ion binding IEA AHRD
BP GO:0009555 pollen development IEA AHRD
BP GO:0009793 embryo development ending in seed dormancy IEA AHRD
BP GO:0009910 negative regulation of flower development IEA AHRD
BP GO:0010216 maintenance of DNA methylation IEA AHRD
BP GO:0010628 positive regulation of gene expression IEA AHRD
BP GO:0030717 oocyte karyosome formation IEA AHRD
MF GO:0031490 chromatin DNA binding IEA AHRD
BP GO:0032922 circadian regulation of gene expression IEA AHRD
CC GO:0032993 protein-DNA complex IEA AHRD
BP GO:0033601 positive regulation of mammary gland epithelial cell proliferation IEA AHRD
MF GO:0033749 histone H3-methyl-arginine-3 demethylase activity IEA AHRD
MF GO:0034647 histone H3-tri/di/monomethyl-lysine-4 demethylase activity IEA AHRD
MF GO:0034648 obsolete histone demethylase activity (H3-dimethyl-K4 specific) IEA AHRD
BP GO:0034721 histone H3-K4 demethylation, trimethyl-H3-K4-specific IEA AHRD
MF GO:0035064 methylated histone binding IEA AHRD
BP GO:0036098 male germ-line stem cell population maintenance IEA AHRD
BP GO:0040010 positive regulation of growth rate IEA AHRD
MF GO:0042054 histone methyltransferase activity IEA AHRD
BP GO:0043970 histone H3-K9 acetylation IEA AHRD
BP GO:0045475 locomotor rhythm IEA AHRD
BP GO:0045814 negative regulation of gene expression, epigenetic IEA AHRD
BP GO:0045893 positive regulation of DNA-templated transcription IEA AHRD
BP GO:0048579 negative regulation of long-day photoperiodism, flowering IEA AHRD
MF GO:0050681 nuclear androgen receptor binding IEA AHRD
BP GO:0051090 regulation of DNA-binding transcription factor activity IEA AHRD
BP GO:0060444 branching involved in mammary gland duct morphogenesis IEA AHRD
BP GO:0060763 mammary duct terminal end bud growth IEA AHRD
BP GO:0060765 regulation of androgen receptor signaling pathway IEA AHRD
BP GO:0061038 uterus morphogenesis IEA AHRD
BP GO:0070193 synaptonemal complex organization IEA AHRD
CC GO:0070822 Sin3-type complex IEA AHRD
BP GO:1901726 negative regulation of histone deacetylase activity IEA AHRD
BP GO:1990830 cellular response to leukemia inhibitory factor IEA AHRD
BP GO:2000737 negative regulation of stem cell differentiation IEA AHRD
BP GO:2000864 regulation of estradiol secretion IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
MF GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
BP GO:0002478 antigen processing and presentation of exogenous peptide antigen IEP Predict GO terms from Neighborhoods
BP GO:0002495 antigen processing and presentation of peptide antigen via MHC class II IEP Predict GO terms from Neighborhoods
BP GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II IEP Predict GO terms from Neighborhoods
MF GO:0003684 damaged DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003958 NADPH-hemoprotein reductase activity IEP Predict GO terms from Neighborhoods
BP GO:0006605 protein targeting IEP Predict GO terms from Neighborhoods
BP GO:0006612 protein targeting to membrane IEP Predict GO terms from Neighborhoods
BP GO:0006629 lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006644 phospholipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006650 glycerophospholipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006873 cellular ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0006885 regulation of pH IEP Predict GO terms from Neighborhoods
BP GO:0006897 endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0006898 receptor-mediated endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0006906 vesicle fusion IEP Predict GO terms from Neighborhoods
BP GO:0006935 chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0006950 response to stress IEP Predict GO terms from Neighborhoods
BP GO:0007034 vacuolar transport IEP Predict GO terms from Neighborhoods
BP GO:0007041 lysosomal transport IEP Predict GO terms from Neighborhoods
BP GO:0008333 endosome to lysosome transport IEP Predict GO terms from Neighborhoods
BP GO:0008610 lipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0008654 phospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0010008 endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0010118 stomatal movement IEP Predict GO terms from Neighborhoods
MF GO:0010181 FMN binding IEP Predict GO terms from Neighborhoods
BP GO:0010224 response to UV-B IEP Predict GO terms from Neighborhoods
BP GO:0010256 endomembrane system organization IEP Predict GO terms from Neighborhoods
BP GO:0010893 positive regulation of steroid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010927 cellular component assembly involved in morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0016032 viral process IEP Predict GO terms from Neighborhoods
BP GO:0016050 vesicle organization IEP Predict GO terms from Neighborhoods
BP GO:0016197 endosomal transport IEP Predict GO terms from Neighborhoods
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0016477 cell migration IEP Predict GO terms from Neighborhoods
BP GO:0016482 cytosolic transport IEP Predict GO terms from Neighborhoods
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predict GO terms from Neighborhoods
MF GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016791 phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0018105 peptidyl-serine phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0018209 peptidyl-serine modification IEP Predict GO terms from Neighborhoods
BP GO:0019065 receptor-mediated endocytosis of virus by host cell IEP Predict GO terms from Neighborhoods
BP GO:0019218 regulation of steroid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019884 antigen processing and presentation of exogenous antigen IEP Predict GO terms from Neighborhoods
BP GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II IEP Predict GO terms from Neighborhoods
BP GO:0022411 cellular component disassembly IEP Predict GO terms from Neighborhoods
BP GO:0030003 cellular cation homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0030004 cellular monovalent inorganic cation homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0030593 neutrophil chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0030595 leukocyte chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0030641 regulation of cellular pH IEP Predict GO terms from Neighborhoods
CC GO:0030666 endocytic vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030670 phagocytic vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
CC GO:0031901 early endosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0031902 late endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0032288 myelin assembly IEP Predict GO terms from Neighborhoods
BP GO:0032438 melanosome organization IEP Predict GO terms from Neighborhoods
BP GO:0032984 protein-containing complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0034504 protein localization to nucleus IEP Predict GO terms from Neighborhoods
MF GO:0034593 phosphatidylinositol bisphosphate phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0034595 phosphatidylinositol phosphate 5-phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0034698 response to gonadotropin IEP Predict GO terms from Neighborhoods
BP GO:0036289 peptidyl-serine autophosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0040011 locomotion IEP Predict GO terms from Neighborhoods
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predict GO terms from Neighborhoods
BP GO:0042214 terpene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042330 taxis IEP Predict GO terms from Neighborhoods
MF GO:0042578 phosphoric ester hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0043066 negative regulation of apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043069 negative regulation of programmed cell death IEP Predict GO terms from Neighborhoods
MF GO:0043813 phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0044088 regulation of vacuole organization IEP Predict GO terms from Neighborhoods
BP GO:0044255 cellular lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044270 cellular nitrogen compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045017 glycerolipid biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0045121 membrane raft IEP Predict GO terms from Neighborhoods
BP GO:0045834 positive regulation of lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045940 positive regulation of steroid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046246 terpene biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046486 glycerolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046488 phosphatidylinositol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046794 transport of virus IEP Predict GO terms from Neighborhoods
BP GO:0046854 phosphatidylinositol phosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046889 positive regulation of lipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046890 regulation of lipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0048002 antigen processing and presentation of peptide antigen IEP Predict GO terms from Neighborhoods
BP GO:0048284 organelle fusion IEP Predict GO terms from Neighborhoods
CC GO:0048471 perinuclear region of cytoplasm IEP Predict GO terms from Neighborhoods
BP GO:0048753 pigment granule organization IEP Predict GO terms from Neighborhoods
BP GO:0048870 cell motility IEP Predict GO terms from Neighborhoods
MF GO:0050660 flavin adenine dinucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0050661 NADP binding IEP Predict GO terms from Neighborhoods
BP GO:0050810 regulation of steroid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0050829 defense response to Gram-negative bacterium IEP Predict GO terms from Neighborhoods
BP GO:0050900 leukocyte migration IEP Predict GO terms from Neighborhoods
BP GO:0051452 intracellular pH reduction IEP Predict GO terms from Neighborhoods
BP GO:0051453 regulation of intracellular pH IEP Predict GO terms from Neighborhoods
BP GO:0051668 localization within membrane IEP Predict GO terms from Neighborhoods
BP GO:0051761 sesquiterpene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051762 sesquiterpene biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0052742 phosphatidylinositol kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0052810 1-phosphatidylinositol-5-kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0052866 phosphatidylinositol phosphate phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0055067 monovalent inorganic cation homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0060326 cell chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0061025 membrane fusion IEP Predict GO terms from Neighborhoods
BP GO:0071371 cellular response to gonadotropin stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071621 granulocyte chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0072657 protein localization to membrane IEP Predict GO terms from Neighborhoods
BP GO:0075509 endocytosis involved in viral entry into host cell IEP Predict GO terms from Neighborhoods
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
BP GO:0090150 establishment of protein localization to membrane IEP Predict GO terms from Neighborhoods
BP GO:0090174 organelle membrane fusion IEP Predict GO terms from Neighborhoods
BP GO:0090181 regulation of cholesterol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090332 stomatal closure IEP Predict GO terms from Neighborhoods
BP GO:0090383 phagosome acidification IEP Predict GO terms from Neighborhoods
BP GO:0090385 phagosome-lysosome fusion IEP Predict GO terms from Neighborhoods
BP GO:0097352 autophagosome maturation IEP Predict GO terms from Neighborhoods
BP GO:0097529 myeloid leukocyte migration IEP Predict GO terms from Neighborhoods
BP GO:0097530 granulocyte migration IEP Predict GO terms from Neighborhoods
CC GO:0098857 membrane microdomain IEP Predict GO terms from Neighborhoods
MF GO:0106018 phosphatidylinositol-3,5-bisphosphate phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:1902115 regulation of organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:1903100 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903426 regulation of reactive oxygen species biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903829 positive regulation of protein localization IEP Predict GO terms from Neighborhoods
BP GO:1904562 phosphatidylinositol 5-phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1905161 protein localization to phagocytic vesicle IEP Predict GO terms from Neighborhoods
BP GO:1990266 neutrophil migration IEP Predict GO terms from Neighborhoods
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000785 regulation of autophagosome assembly IEP Predict GO terms from Neighborhoods
BP GO:2001057 reactive nitrogen species metabolic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004198 Znf_C5HC2 498 550
IPR003889 FYrich_C 666 749
IPR003347 JmjC_dom 275 390
IPR003349 JmjN 45 78
No external refs found!