SOLTUB.AGRIA.G00000000678

Description : COP9 signalosome complex subunit 2

Gene families : OG_02_0000908 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000000678
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_248

Type	GO Term	Name	Evidence	Source
BP	GO:0000122	negative regulation of transcription by RNA polymerase II	IEA	AHRD
BP	GO:0000338	protein deneddylation	IEA	AHRD
MF	GO:0000822	inositol hexakisphosphate binding	IEA	AHRD
BP	GO:0000909	sporocarp development involved in sexual reproduction	None	Extended
BP	GO:0001833	inner cell mass cell proliferation	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003712	transcription coregulator activity	None	Extended
MF	GO:0003714	transcription corepressor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006468	protein phosphorylation	IEA	AHRD
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	IEA	AHRD
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007282	cystoblast division	None	Extended
BP	GO:0007602	phototransduction	None	Extended
MF	GO:0008134	transcription factor binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0008180	COP9 signalosome	IEA	AHRD
CC	GO:0008230	ecdysone receptor holocomplex	None	Extended
CC	GO:0008231	repressor ecdysone receptor complex	IEA	AHRD
BP	GO:0008283	cell population proliferation	None	Extended
BP	GO:0008356	asymmetric cell division	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009585	red, far-red light phototransduction	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016922	nuclear receptor binding	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019827	stem cell population maintenance	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0022624	proteasome accessory complex	IEA	AHRD
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030163	protein catabolic process	IEA	AHRD
BP	GO:0030182	neuron differentiation	IEA	AHRD
BP	GO:0030582	reproductive fruiting body development	None	Extended
BP	GO:0030584	sporocarp development	None	Extended
BP	GO:0030718	germ-line stem cell population maintenance	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031647	regulation of protein stability	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0035914	skeletal muscle cell differentiation	IEA	AHRD
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036099	female germ-line stem cell population maintenance	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043178	alcohol binding	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048138	germ-line cyst encapsulation	None	Extended
BP	GO:0048140	male germ-line cyst encapsulation	IEA	AHRD
BP	GO:0048142	germarium-derived cystoblast division	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050821	protein stabilization	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051301	cell division	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
MF	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0070791	cleistothecium development	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0075259	spore-bearing structure development	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
BP	GO:0098727	maintenance of cell number	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:0140297	DNA-binding transcription factor binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000322	storage vacuole	IEP	Predict GO terms from Neighborhoods
CC	GO:0000325	plant-type vacuole	IEP	Predict GO terms from Neighborhoods
CC	GO:0000326	protein storage vacuole	IEP	Predict GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predict GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predict GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003953	NAD+ nucleosidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005684	U2-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006605	protein targeting	IEP	Predict GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006914	autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0007163	establishment or maintenance of cell polarity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008092	cytoskeletal protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008360	regulation of cell shape	IEP	Predict GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Predict GO terms from Neighborhoods
MF	GO:0015631	tubulin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0016018	cyclosporin A binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0016236	macroautophagy	IEP	Predict GO terms from Neighborhoods
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0019904	protein domain specific binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0022406	membrane docking	IEP	Predict GO terms from Neighborhoods
BP	GO:0022411	cellular component disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0022604	regulation of cell morphogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0030054	cell junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	Predict GO terms from Neighborhoods
CC	GO:0032541	cortical endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
MF	GO:0033218	amide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0042277	peptide binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0044232	organelle membrane contact site	IEP	Predict GO terms from Neighborhoods
BP	GO:0044788	modulation by host of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044789	obsolete modulation by host of viral release from host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0044793	negative regulation by host of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044794	positive regulation by host of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044827	modulation by host of viral genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0048193	Golgi vesicle transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0048524	positive regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048525	negative regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050792	regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051640	organelle localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051643	endoplasmic reticulum localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051702	biological process involved in interaction with symbiont	IEP	Predict GO terms from Neighborhoods
BP	GO:0051851	modulation by host of symbiont process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061024	membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0061709	reticulophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0061817	endoplasmic reticulum-plasma membrane tethering	IEP	Predict GO terms from Neighborhoods
BP	GO:0061912	selective autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Predict GO terms from Neighborhoods
CC	GO:0071005	U2-type precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071007	U2-type catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071011	precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071013	catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071782	endoplasmic reticulum tubular network	IEP	Predict GO terms from Neighborhoods
BP	GO:0071963	establishment or maintenance of cell polarity regulating cell shape	IEP	Predict GO terms from Neighborhoods
BP	GO:0090158	endoplasmic reticulum membrane organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0097718	disordered domain specific binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0098827	endoplasmic reticulum subcompartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0140056	organelle localization by membrane tethering	IEP	Predict GO terms from Neighborhoods
CC	GO:0140268	endoplasmic reticulum-plasma membrane contact site	IEP	Predict GO terms from Neighborhoods
BP	GO:1903008	organelle disassembly	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036390	WH_DNA-bd_sf	335	411
IPR000717	PCI_dom	306	406

External Links

No external refs found!

SOLTUB.AGRIA.G00000000678

Expression Profile

Co-expression Networks

Functional Annotation