Coexpression cluster: Cluster_257 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1903052 positive regulation of proteolysis involved in protein catabolic process 10.42% (5/48) 4.25 7e-06 0.003567
GO:0045862 positive regulation of proteolysis 10.42% (5/48) 3.7 4.1e-05 0.003689
GO:0070651 nonfunctional rRNA decay 4.17% (2/48) 7.67 4.1e-05 0.004022
GO:0043632 modification-dependent macromolecule catabolic process 14.58% (7/48) 2.89 4e-05 0.004322
GO:0010498 proteasomal protein catabolic process 12.5% (6/48) 3.14 5.8e-05 0.004442
GO:2000142 regulation of DNA-templated transcription initiation 6.25% (3/48) 5.37 5.4e-05 0.004451
GO:1903050 regulation of proteolysis involved in protein catabolic process 10.42% (5/48) 3.71 4e-05 0.004771
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 12.5% (6/48) 3.26 3.7e-05 0.004965
GO:0060260 regulation of transcription initiation by RNA polymerase II 6.25% (3/48) 5.58 3.5e-05 0.005332
GO:0051247 positive regulation of protein metabolic process 18.75% (9/48) 2.79 5e-06 0.005344
GO:0019941 modification-dependent protein catabolic process 14.58% (7/48) 2.94 3.2e-05 0.005742
GO:0051603 proteolysis involved in protein catabolic process 14.58% (7/48) 2.71 8.7e-05 0.006252
GO:1901800 positive regulation of proteasomal protein catabolic process 8.33% (4/48) 4.08 9.5e-05 0.006355
GO:0006511 ubiquitin-dependent protein catabolic process 14.58% (7/48) 2.95 3.1e-05 0.006658
GO:2000144 positive regulation of DNA-templated transcription initiation 6.25% (3/48) 5.73 2.5e-05 0.006831
GO:0030163 protein catabolic process 12.5% (6/48) 2.95 0.00012 0.007181
GO:1901565 organonitrogen compound catabolic process 16.67% (8/48) 2.41 0.000114 0.007202
GO:0031396 regulation of protein ubiquitination 8.33% (4/48) 3.96 0.000129 0.007271
GO:0060261 positive regulation of transcription initiation by RNA polymerase II 6.25% (3/48) 5.8 2.2e-05 0.00796
GO:0005515 protein binding 64.58% (31/48) 0.77 0.000159 0.008528
GO:0045732 positive regulation of protein catabolic process 8.33% (4/48) 3.69 0.000267 0.009246
GO:0051246 regulation of protein metabolic process 20.83% (10/48) 1.91 0.000253 0.009377
GO:0051171 regulation of nitrogen compound metabolic process 35.42% (17/48) 1.28 0.000264 0.009471
GO:0060968 obsolete regulation of gene silencing 4.17% (2/48) 6.42 0.000249 0.009566
GO:0051572 negative regulation of histone H3-K4 methylation 4.17% (2/48) 6.42 0.000249 0.009566
GO:0051965 positive regulation of synapse assembly 4.17% (2/48) 6.58 0.000198 0.009698
GO:1901890 positive regulation of cell junction assembly 4.17% (2/48) 6.58 0.000198 0.009698
GO:0051173 positive regulation of nitrogen compound metabolic process 25.0% (12/48) 1.68 0.000237 0.009818
GO:0036402 proteasome-activating activity 4.17% (2/48) 6.5 0.000223 0.009993
GO:1903320 regulation of protein modification by small protein conjugation or removal 8.33% (4/48) 3.73 0.000236 0.010147
GO:0070682 proteasome regulatory particle assembly 4.17% (2/48) 6.28 0.000305 0.010263
GO:0060255 regulation of macromolecule metabolic process 37.5% (18/48) 1.25 0.000221 0.010313
GO:0061136 regulation of proteasomal protein catabolic process 8.33% (4/48) 3.59 0.000346 0.010625
GO:0031597 cytosolic proteasome complex 4.17% (2/48) 6.15 0.000367 0.010677
GO:0044265 cellular macromolecule catabolic process 14.58% (7/48) 2.39 0.00034 0.010738
GO:1901215 negative regulation of neuron death 6.25% (3/48) 4.45 0.000361 0.010767
GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly 4.17% (2/48) 6.21 0.000336 0.010938
GO:0045898 regulation of RNA polymerase II transcription preinitiation complex assembly 4.17% (2/48) 6.08 0.000401 0.011041
GO:0060090 molecular adaptor activity 8.33% (4/48) 3.54 0.000391 0.01107
GO:0010604 positive regulation of macromolecule metabolic process 25.0% (12/48) 1.58 0.000466 0.011661
GO:0032991 protein-containing complex 31.25% (15/48) 1.34 0.000466 0.011932
GO:0009893 positive regulation of metabolic process 27.08% (13/48) 1.49 0.000461 0.012076
GO:0044089 positive regulation of cellular component biogenesis 8.33% (4/48) 3.48 0.000452 0.012159
GO:0009896 positive regulation of catabolic process 10.42% (5/48) 2.9 0.000549 0.012565
GO:0008540 proteasome regulatory particle, base subcomplex 4.17% (2/48) 5.86 0.000547 0.012781
GO:0016075 rRNA catabolic process 4.17% (2/48) 5.86 0.000547 0.012781
GO:0051963 regulation of synapse assembly 4.17% (2/48) 5.81 0.000587 0.012877
GO:0080090 regulation of primary metabolic process 35.42% (17/48) 1.19 0.000576 0.012891
GO:0035966 response to topologically incorrect protein 6.25% (3/48) 4.25 0.000533 0.013014
GO:0030162 regulation of proteolysis 10.42% (5/48) 2.83 0.000683 0.014111
GO:0010468 regulation of gene expression 31.25% (15/48) 1.29 0.000681 0.014354
GO:0051788 response to misfolded protein 4.17% (2/48) 5.72 0.000671 0.01443
GO:0043228 non-membrane-bounded organelle 25.0% (12/48) 1.5 0.000753 0.014984
GO:0043232 intracellular non-membrane-bounded organelle 25.0% (12/48) 1.5 0.000753 0.014984
GO:1903322 positive regulation of protein modification by small protein conjugation or removal 6.25% (3/48) 4.05 0.000796 0.015562
GO:0045944 positive regulation of transcription by RNA polymerase II 10.42% (5/48) 2.76 0.000851 0.01634
GO:0019222 regulation of metabolic process 39.58% (19/48) 1.04 0.000875 0.016508
GO:2000060 positive regulation of ubiquitin-dependent protein catabolic process 6.25% (3/48) 3.9 0.001092 0.020237
GO:0043248 proteasome assembly 4.17% (2/48) 5.35 0.001118 0.020369
GO:0009933 meristem structural organization 4.17% (2/48) 5.28 0.001232 0.020696
GO:0034661 ncRNA catabolic process 4.17% (2/48) 5.31 0.001174 0.020696
GO:1901888 regulation of cell junction assembly 4.17% (2/48) 5.31 0.001174 0.020696
GO:0010556 regulation of macromolecule biosynthetic process 27.08% (13/48) 1.34 0.001197 0.020757
GO:0016784 3-mercaptopyruvate sulfurtransferase activity 2.08% (1/48) 9.67 0.001228 0.020954
GO:0090351 seedling development 4.17% (2/48) 5.21 0.001352 0.022354
GO:0005654 nucleoplasm 16.67% (8/48) 1.87 0.001374 0.022387
GO:0031061 negative regulation of histone methylation 4.17% (2/48) 5.15 0.001476 0.022675
GO:1901214 regulation of neuron death 6.25% (3/48) 3.75 0.001472 0.022935
GO:0006508 proteolysis 14.58% (7/48) 2.04 0.001433 0.022991
GO:0140535 intracellular protein-containing complex 12.5% (6/48) 2.27 0.001462 0.023117
GO:0031326 regulation of cellular biosynthetic process 29.17% (14/48) 1.24 0.00155 0.023147
GO:0031325 positive regulation of cellular metabolic process 22.92% (11/48) 1.47 0.001573 0.023164
GO:0005484 SNAP receptor activity 4.17% (2/48) 5.11 0.001541 0.023331
GO:0043392 negative regulation of DNA binding 4.17% (2/48) 5.08 0.001607 0.02334
GO:0043171 peptide catabolic process 4.17% (2/48) 5.05 0.001674 0.02399
GO:0000502 proteasome complex 4.17% (2/48) 5.03 0.001742 0.024641
GO:0017025 TBP-class protein binding 4.17% (2/48) 5.0 0.001812 0.02497
GO:0042176 regulation of protein catabolic process 8.33% (4/48) 2.94 0.001806 0.02522
GO:0009057 macromolecule catabolic process 14.58% (7/48) 1.96 0.001972 0.025859
GO:0050794 regulation of cellular process 50.0% (24/48) 0.78 0.001905 0.025924
GO:0048518 positive regulation of biological process 35.42% (17/48) 1.04 0.001957 0.025966
GO:0048829 root cap development 4.17% (2/48) 4.94 0.001955 0.026271
GO:0009889 regulation of biosynthetic process 29.17% (14/48) 1.19 0.002111 0.027017
GO:0044260 cellular macromolecule metabolic process 22.92% (11/48) 1.39 0.002478 0.027182
GO:0035077 ecdysone-mediated polytene chromosome puffing 2.08% (1/48) 8.67 0.002455 0.027202
GO:0035293 chitin-based larval cuticle pattern formation 2.08% (1/48) 8.67 0.002455 0.027202
GO:0061700 GATOR2 complex 2.08% (1/48) 8.67 0.002455 0.027202
GO:1904438 regulation of iron ion import across plasma membrane 2.08% (1/48) 8.67 0.002455 0.027202
GO:1904439 negative regulation of iron ion import across plasma membrane 2.08% (1/48) 8.67 0.002455 0.027202
GO:0016587 Isw1 complex 2.08% (1/48) 8.67 0.002455 0.027202
GO:0060962 regulation of ribosomal protein gene transcription by RNA polymerase II 2.08% (1/48) 8.67 0.002455 0.027202
GO:0060963 positive regulation of ribosomal protein gene transcription by RNA polymerase II 2.08% (1/48) 8.67 0.002455 0.027202
GO:1905369 endopeptidase complex 4.17% (2/48) 4.89 0.002104 0.027245
GO:0031201 SNARE complex 4.17% (2/48) 4.74 0.00258 0.028017
GO:0031328 positive regulation of cellular biosynthetic process 18.75% (9/48) 1.58 0.002625 0.028222
GO:0001654 eye development 4.17% (2/48) 4.72 0.002664 0.028355
GO:0097602 cullin family protein binding 4.17% (2/48) 4.81 0.002336 0.028865
GO:0000151 ubiquitin ligase complex 8.33% (4/48) 2.84 0.002371 0.028966
GO:0031399 regulation of protein modification process 12.5% (6/48) 2.13 0.002326 0.029069
GO:0019787 ubiquitin-like protein transferase activity 10.42% (5/48) 2.43 0.002301 0.029096
GO:1901575 organic substance catabolic process 20.83% (10/48) 1.49 0.002447 0.029559
GO:0030674 protein-macromolecule adaptor activity 6.25% (3/48) 3.38 0.003003 0.03075
GO:0009891 positive regulation of biosynthetic process 18.75% (9/48) 1.56 0.002952 0.030812
GO:0000785 chromatin 8.33% (4/48) 2.74 0.002981 0.030813
GO:0006355 regulation of DNA-templated transcription 22.92% (11/48) 1.35 0.003043 0.030856
GO:0016043 cellular component organization 33.33% (16/48) 1.03 0.002949 0.031079
GO:2001141 regulation of RNA biosynthetic process 22.92% (11/48) 1.34 0.003124 0.031098
GO:1903506 regulation of nucleic acid-templated transcription 22.92% (11/48) 1.34 0.003111 0.031251
GO:0043085 positive regulation of catalytic activity 8.33% (4/48) 2.7 0.003323 0.032181
GO:0099120 socially cooperative development 6.25% (3/48) 3.34 0.003301 0.032259
GO:0044093 positive regulation of molecular function 10.42% (5/48) 2.31 0.003295 0.0325
GO:0019577 aldaric acid metabolic process 2.08% (1/48) 8.08 0.00368 0.03269
GO:0019579 aldaric acid catabolic process 2.08% (1/48) 8.08 0.00368 0.03269
GO:0006588 activation of tryptophan 5-monooxygenase activity 2.08% (1/48) 8.08 0.00368 0.03269
GO:0051664 nuclear pore localization 2.08% (1/48) 8.08 0.00368 0.03269
GO:1902958 positive regulation of mitochondrial electron transport, NADH to ubiquinone 2.08% (1/48) 8.08 0.00368 0.03269
GO:1904232 regulation of aconitate hydratase activity 2.08% (1/48) 8.08 0.00368 0.03269
GO:1904234 positive regulation of aconitate hydratase activity 2.08% (1/48) 8.08 0.00368 0.03269
GO:0030998 linear element 2.08% (1/48) 8.08 0.00368 0.03269
GO:0031369 translation initiation factor binding 4.17% (2/48) 4.44 0.00387 0.034101
GO:0034976 response to endoplasmic reticulum stress 6.25% (3/48) 3.24 0.003949 0.03451
GO:2000058 regulation of ubiquitin-dependent protein catabolic process 6.25% (3/48) 3.29 0.003616 0.034706
GO:0000776 kinetochore 4.17% (2/48) 4.48 0.003671 0.034921
GO:0042393 histone binding 6.25% (3/48) 3.2 0.004299 0.037273
GO:0140296 general transcription initiation factor binding 4.17% (2/48) 4.35 0.00439 0.037453
GO:0048522 positive regulation of cellular process 29.17% (14/48) 1.08 0.004385 0.037709
GO:0010557 positive regulation of macromolecule biosynthetic process 16.67% (8/48) 1.59 0.004502 0.037807
GO:0051569 regulation of histone H3-K4 methylation 4.17% (2/48) 4.33 0.004497 0.038069
GO:0035266 meristem growth 4.17% (2/48) 4.31 0.004606 0.038385
GO:0005940 septin ring 2.08% (1/48) 7.67 0.004903 0.039931
GO:0032156 septin cytoskeleton 2.08% (1/48) 7.67 0.004903 0.039931
GO:1903026 negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding 2.08% (1/48) 7.67 0.004903 0.039931
GO:1905368 peptidase complex 4.17% (2/48) 4.24 0.005054 0.040543
GO:0044248 cellular catabolic process 18.75% (9/48) 1.44 0.005033 0.040684
GO:0071840 cellular component organization or biogenesis 33.33% (16/48) 0.94 0.005581 0.044443
GO:0034760 negative regulation of iron ion transmembrane transport 2.08% (1/48) 7.35 0.006125 0.0451
GO:0051349 positive regulation of lyase activity 2.08% (1/48) 7.35 0.006125 0.0451
GO:1902956 regulation of mitochondrial electron transport, NADH to ubiquinone 2.08% (1/48) 7.35 0.006125 0.0451
GO:0004792 thiosulfate sulfurtransferase activity 2.08% (1/48) 7.35 0.006125 0.0451
GO:0071232 cellular response to histidine 2.08% (1/48) 7.35 0.006125 0.0451
GO:0031372 UBC13-MMS2 complex 2.08% (1/48) 7.35 0.006125 0.0451
GO:0035370 UBC13-UEV1A complex 2.08% (1/48) 7.35 0.006125 0.0451
GO:0005829 cytosol 29.17% (14/48) 1.03 0.005757 0.04517
GO:0065003 protein-containing complex assembly 12.5% (6/48) 1.84 0.006202 0.045354
GO:0031401 positive regulation of protein modification process 8.33% (4/48) 2.48 0.005741 0.045381
GO:0051252 regulation of RNA metabolic process 22.92% (11/48) 1.21 0.006305 0.045798
GO:0009056 catabolic process 20.83% (10/48) 1.29 0.00637 0.045956
GO:0000209 protein polyubiquitination 6.25% (3/48) 3.03 0.005999 0.046394
GO:0051128 regulation of cellular component organization 16.67% (8/48) 1.52 0.005987 0.04664
GO:0000149 SNARE binding 4.17% (2/48) 4.05 0.006511 0.04666
GO:0005488 binding 68.75% (33/48) 0.46 0.006779 0.047944
GO:0006906 vesicle fusion 4.17% (2/48) 4.03 0.00677 0.048197
GO:0007292 female gamete generation 4.17% (2/48) 4.01 0.006901 0.04849
GO:1990856 methionyl-initiator methionine tRNA binding 2.08% (1/48) 7.08 0.007346 0.049049
GO:2000436 positive regulation of protein neddylation 2.08% (1/48) 7.08 0.007346 0.049049
GO:0007482 haltere development 2.08% (1/48) 7.08 0.007346 0.049049
GO:0044545 NSL complex 2.08% (1/48) 7.08 0.007346 0.049049
GO:0048737 imaginal disc-derived appendage development 2.08% (1/48) 7.08 0.007346 0.049049
GO:0071262 regulation of translational initiation in response to starvation 2.08% (1/48) 7.08 0.007346 0.049049
GO:0071264 positive regulation of translational initiation in response to starvation 2.08% (1/48) 7.08 0.007346 0.049049
GO:0007423 sensory organ development 4.17% (2/48) 3.96 0.007439 0.049361
GO:0031323 regulation of cellular metabolic process 31.25% (15/48) 0.94 0.007616 0.049921
GO:0000281 mitotic cytokinesis 4.17% (2/48) 3.94 0.007576 0.049962
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_264 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_268 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_345 0.019 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_7 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_134 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_140 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_167 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_212 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_217 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_238 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_241 0.01 Orthogroups with 8 Potato genotypes Compare
Sequences (48) (download table)

InterPro Domains

GO Terms

Family Terms