Coexpression cluster: Cluster_212 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0001677 formation of translation initiation ternary complex 4.0% (2/50) 8.61 1e-05 0.011162
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) 4.0% (2/50) 7.15 8.8e-05 0.012717
GO:0045257 succinate dehydrogenase complex (ubiquinone) 4.0% (2/50) 7.15 8.8e-05 0.012717
GO:0045281 succinate dehydrogenase complex 4.0% (2/50) 7.15 8.8e-05 0.012717
GO:0045283 fumarate reductase complex 4.0% (2/50) 7.15 8.8e-05 0.012717
GO:0044613 nuclear pore central transport channel 4.0% (2/50) 7.8 3.4e-05 0.01299
GO:0002188 translation reinitiation 4.0% (2/50) 8.03 2.4e-05 0.013929
GO:0031369 translation initiation factor binding 6.0% (3/50) 4.97 0.000125 0.01609
GO:0000421 autophagosome membrane 4.0% (2/50) 6.61 0.00019 0.017004
GO:0002183 cytoplasmic translational initiation 4.0% (2/50) 6.61 0.00019 0.017004
GO:0003743 translation initiation factor activity 6.0% (3/50) 4.6 0.000267 0.018235
GO:0008104 protein localization 18.0% (9/50) 2.08 0.000236 0.018304
GO:0098803 respiratory chain complex 6.0% (3/50) 4.61 0.000259 0.018793
GO:0030674 protein-macromolecule adaptor activity 8.0% (4/50) 3.74 0.000232 0.019277
GO:0043495 protein-membrane adaptor activity 4.0% (2/50) 6.29 0.0003 0.019381
GO:0019941 modification-dependent protein catabolic process 12.0% (6/50) 2.66 0.000356 0.019672
GO:0061659 ubiquitin-like protein ligase activity 10.0% (5/50) 3.24 0.000186 0.019678
GO:0061630 ubiquitin protein ligase activity 10.0% (5/50) 3.27 0.00017 0.019775
GO:0006508 proteolysis 16.0% (8/50) 2.17 0.000349 0.020298
GO:0005515 protein binding 62.0% (31/50) 0.71 0.000463 0.020696
GO:0043632 modification-dependent macromolecule catabolic process 12.0% (6/50) 2.61 0.00043 0.020801
GO:0098796 membrane protein complex 12.0% (6/50) 2.62 0.000415 0.02097
GO:0043023 ribosomal large subunit binding 4.0% (2/50) 6.09 0.000399 0.021064
GO:0006511 ubiquitin-dependent protein catabolic process 12.0% (6/50) 2.67 0.000345 0.021127
GO:0060090 molecular adaptor activity 8.0% (4/50) 3.48 0.000458 0.021287
GO:0001732 formation of cytoplasmic translation initiation complex 4.0% (2/50) 5.86 0.000551 0.02136
GO:0051641 cellular localization 20.0% (10/50) 1.76 0.000592 0.02149
GO:0070727 cellular macromolecule localization 18.0% (9/50) 1.92 0.000518 0.021518
GO:0015031 protein transport 14.0% (7/50) 2.27 0.000583 0.021853
GO:0051179 localization 32.0% (16/50) 1.26 0.000546 0.021887
GO:0040015 negative regulation of multicellular organism growth 4.0% (2/50) 5.91 0.000511 0.021993
GO:0006413 translational initiation 6.0% (3/50) 5.15 8.5e-05 0.024734
GO:0045184 establishment of protein localization 14.0% (7/50) 2.17 0.000844 0.026518
GO:0001731 formation of translation preinitiation complex 4.0% (2/50) 5.61 0.000776 0.026524
GO:0032991 protein-containing complex 30.0% (15/50) 1.28 0.000755 0.026581
GO:0033290 eukaryotic 48S preinitiation complex 4.0% (2/50) 5.57 0.000825 0.026645
GO:0051603 proteolysis involved in protein catabolic process 12.0% (6/50) 2.43 0.00082 0.027216
GO:0106332 ds/ssDNA junction-specific dsDNA endonuclease activity 2.0% (1/50) 9.61 0.001279 0.027526
GO:1990238 double-stranded DNA endodeoxyribonuclease activity 2.0% (1/50) 9.61 0.001279 0.027526
GO:0009597 detection of virus 2.0% (1/50) 9.61 0.001279 0.027526
GO:0042272 nuclear RNA export factor complex 2.0% (1/50) 9.61 0.001279 0.027526
GO:1904895 ESCRT complex assembly 2.0% (1/50) 9.61 0.001279 0.027526
GO:1904902 ESCRT III complex assembly 2.0% (1/50) 9.61 0.001279 0.027526
GO:0060098 membrane reorganization involved in phagocytosis, engulfment 2.0% (1/50) 9.61 0.001279 0.027526
GO:0010722 regulation of ferrochelatase activity 2.0% (1/50) 9.61 0.001279 0.027526
GO:0034986 iron chaperone activity 2.0% (1/50) 9.61 0.001279 0.027526
GO:1904229 regulation of succinate dehydrogenase activity 2.0% (1/50) 9.61 0.001279 0.027526
GO:1904231 positive regulation of succinate dehydrogenase activity 2.0% (1/50) 9.61 0.001279 0.027526
GO:0000045 autophagosome assembly 4.0% (2/50) 5.18 0.0014 0.029056
GO:1990204 oxidoreductase complex 6.0% (3/50) 3.78 0.001386 0.02929
GO:0033036 macromolecule localization 18.0% (9/50) 1.76 0.001127 0.031193
GO:0008135 translation factor activity, RNA binding 6.0% (3/50) 3.89 0.001105 0.031312
GO:0043024 ribosomal small subunit binding 4.0% (2/50) 5.4 0.001038 0.031736
GO:0016282 eukaryotic 43S preinitiation complex 4.0% (2/50) 5.36 0.001095 0.031798
GO:0098800 inner mitochondrial membrane protein complex 6.0% (3/50) 3.9 0.001085 0.032322
GO:0005575 cellular_component 82.0% (41/50) 0.43 0.001217 0.032898
GO:0005801 cis-Golgi network 4.0% (2/50) 5.06 0.001671 0.034062
GO:1905037 autophagosome organization 4.0% (2/50) 5.0 0.001815 0.035741
GO:0070993 translation preinitiation complex 4.0% (2/50) 5.0 0.001815 0.035741
GO:0070979 protein K11-linked ubiquitination 4.0% (2/50) 4.97 0.001889 0.03658
GO:0016192 vesicle-mediated transport 12.0% (6/50) 2.19 0.001923 0.036627
GO:0006810 transport 26.0% (13/50) 1.23 0.002569 0.039809
GO:0033557 Slx1-Slx4 complex 2.0% (1/50) 8.61 0.002557 0.040148
GO:0008782 adenosylhomocysteine nucleosidase activity 2.0% (1/50) 8.61 0.002557 0.040148
GO:0008930 methylthioadenosine nucleosidase activity 2.0% (1/50) 8.61 0.002557 0.040148
GO:0033110 Cvt vesicle membrane 2.0% (1/50) 8.61 0.002557 0.040148
GO:0097167 circadian regulation of translation 2.0% (1/50) 8.61 0.002557 0.040148
GO:1903329 regulation of iron-sulfur cluster assembly 2.0% (1/50) 8.61 0.002557 0.040148
GO:0072594 establishment of protein localization to organelle 8.0% (4/50) 2.8 0.002628 0.040175
GO:0090079 translation regulator activity, nucleic acid binding 6.0% (3/50) 3.53 0.00226 0.041037
GO:0051235 maintenance of location 6.0% (3/50) 3.54 0.002229 0.041109
GO:0034504 protein localization to nucleus 6.0% (3/50) 3.54 0.002198 0.041189
GO:0110165 cellular anatomical entity 80.0% (40/50) 0.41 0.002353 0.041424
GO:0019787 ubiquitin-like protein transferase activity 10.0% (5/50) 2.37 0.002758 0.041622
GO:0004842 ubiquitin-protein transferase activity 10.0% (5/50) 2.42 0.002344 0.041911
GO:0019646 aerobic electron transport chain 4.0% (2/50) 4.78 0.002447 0.042436
GO:0044265 cellular macromolecule catabolic process 12.0% (6/50) 2.11 0.00253 0.043233
GO:0071705 nitrogen compound transport 16.0% (8/50) 1.69 0.002988 0.044506
GO:0006995 cellular response to nitrogen starvation 4.0% (2/50) 4.57 0.003264 0.046831
GO:0043021 ribonucleoprotein complex binding 6.0% (3/50) 3.34 0.003254 0.047263
GO:0006099 tricarboxylic acid cycle 4.0% (2/50) 4.54 0.003362 0.047644
GO:0033365 protein localization to organelle 10.0% (5/50) 2.32 0.00324 0.047658
GO:0003725 double-stranded RNA binding 4.0% (2/50) 4.44 0.003871 0.048892
GO:0043085 positive regulation of catalytic activity 8.0% (4/50) 2.64 0.003855 0.049223
GO:0005787 signal peptidase complex 2.0% (1/50) 8.03 0.003833 0.049484
GO:1904232 regulation of aconitate hydratase activity 2.0% (1/50) 8.03 0.003833 0.049484
GO:1904234 positive regulation of aconitate hydratase activity 2.0% (1/50) 8.03 0.003833 0.049484
GO:1990221 L-cysteine desulfurase complex 2.0% (1/50) 8.03 0.003833 0.049484
GO:0035361 Cul8-RING ubiquitin ligase complex 2.0% (1/50) 8.03 0.003833 0.049484
GO:0051759 sister chromosome movement towards spindle pole involved in meiotic sister chromatid segregation 2.0% (1/50) 8.03 0.003833 0.049484
GO:0032507 maintenance of protein location in cell 4.0% (2/50) 4.42 0.003977 0.049689
GO:0006886 intracellular protein transport 10.0% (5/50) 2.24 0.004022 0.049715
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_217 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_249 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_254 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_257 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_268 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_17 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_87 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_126 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_162 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_167 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_180 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_194 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_209 0.011 Orthogroups with 8 Potato genotypes Compare
Sequences (50) (download table)

InterPro Domains

GO Terms

Family Terms