Coexpression cluster: Cluster_133 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity 8.64% (7/81) 8.4 0.0 0.0
GO:0039020 pronephric nephron tubule development 8.64% (7/81) 7.26 0.0 0.0
GO:0072009 nephron epithelium development 8.64% (7/81) 7.08 0.0 0.0
GO:0072080 nephron tubule development 8.64% (7/81) 7.08 0.0 0.0
GO:0072073 kidney epithelium development 8.64% (7/81) 6.97 0.0 0.0
GO:0061326 renal tubule development 8.64% (7/81) 6.51 0.0 0.0
GO:0047372 acylglycerol lipase activity 9.88% (8/81) 5.76 0.0 0.0
GO:0060429 epithelium development 8.64% (7/81) 4.78 0.0 1e-06
GO:0046394 carboxylic acid biosynthetic process 18.52% (15/81) 2.68 0.0 2e-06
GO:0004620 phospholipase activity 8.64% (7/81) 4.43 0.0 5e-06
GO:0016053 organic acid biosynthetic process 18.52% (15/81) 2.53 0.0 5e-06
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor 8.64% (7/81) 4.37 0.0 5e-06
GO:0035295 tube development 8.64% (7/81) 4.38 0.0 5e-06
GO:0005507 copper ion binding 9.88% (8/81) 3.93 0.0 6e-06
GO:0043436 oxoacid metabolic process 25.93% (21/81) 1.93 0.0 6e-06
GO:0016298 lipase activity 9.88% (8/81) 3.88 0.0 6e-06
GO:0046914 transition metal ion binding 19.75% (16/81) 2.33 0.0 7e-06
GO:0006082 organic acid metabolic process 25.93% (21/81) 1.85 0.0 1.3e-05
GO:0006597 spermine biosynthetic process 3.7% (3/81) 7.69 0.0 2.1e-05
GO:1901576 organic substance biosynthetic process 37.04% (30/81) 1.32 1e-06 4.5e-05
GO:0009058 biosynthetic process 38.27% (31/81) 1.29 1e-06 4.6e-05
GO:0044249 cellular biosynthetic process 35.8% (29/81) 1.35 1e-06 4.7e-05
GO:0044283 small molecule biosynthetic process 18.52% (15/81) 2.17 1e-06 5.3e-05
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 8.64% (7/81) 3.73 1e-06 5.8e-05
GO:0016413 O-acetyltransferase activity 7.41% (6/81) 4.12 1e-06 7.2e-05
GO:0072330 monocarboxylic acid biosynthetic process 12.35% (10/81) 2.8 2e-06 8.3e-05
GO:0006629 lipid metabolic process 24.69% (20/81) 1.71 2e-06 8.5e-05
GO:0045735 nutrient reservoir activity 4.94% (4/81) 5.42 2e-06 0.000111
GO:0052689 carboxylic ester hydrolase activity 9.88% (8/81) 3.18 3e-06 0.000135
GO:0004806 triglyceride lipase activity 4.94% (4/81) 5.33 3e-06 0.000135
GO:0019752 carboxylic acid metabolic process 20.99% (17/81) 1.86 3e-06 0.000138
GO:0008215 spermine metabolic process 3.7% (3/81) 6.41 6e-06 0.000233
GO:0006631 fatty acid metabolic process 12.35% (10/81) 2.59 6e-06 0.000235
GO:0010582 floral meristem determinacy 6.17% (5/81) 4.29 6e-06 0.000238
GO:0030145 manganese ion binding 6.17% (5/81) 4.26 7e-06 0.000252
GO:0044281 small molecule metabolic process 27.16% (22/81) 1.47 7e-06 0.000261
GO:0006633 fatty acid biosynthetic process 8.64% (7/81) 3.3 8e-06 0.000265
GO:0008295 spermidine biosynthetic process 3.7% (3/81) 6.18 1e-05 0.000327
GO:0009736 cytokinin-activated signaling pathway 6.17% (5/81) 4.14 1e-05 0.00034
GO:0010022 meristem determinacy 6.17% (5/81) 4.07 1.3e-05 0.000412
GO:0046423 allene-oxide cyclase activity 2.47% (2/81) 8.33 1.3e-05 0.000415
GO:0009695 jasmonic acid biosynthetic process 4.94% (4/81) 4.72 1.7e-05 0.000519
GO:0009536 plastid 19.75% (16/81) 1.74 1.8e-05 0.000539
GO:0052651 monoacylglycerol catabolic process 3.7% (3/81) 5.86 1.9e-05 0.000554
GO:0006596 polyamine biosynthetic process 3.7% (3/81) 5.86 1.9e-05 0.000554
GO:0046340 diacylglycerol catabolic process 3.7% (3/81) 5.8 2.2e-05 0.000611
GO:0009650 UV protection 3.7% (3/81) 5.74 2.4e-05 0.000658
GO:0046462 monoacylglycerol metabolic process 3.7% (3/81) 5.74 2.4e-05 0.000658
GO:0009978 allene oxide synthase activity 2.47% (2/81) 7.91 2.5e-05 0.000663
GO:0000097 sulfur amino acid biosynthetic process 4.94% (4/81) 4.57 2.5e-05 0.000672
GO:0047714 galactolipase activity 3.7% (3/81) 5.64 3e-05 0.000772
GO:0048766 root hair initiation 4.94% (4/81) 4.47 3.3e-05 0.000839
GO:0016410 N-acyltransferase activity 6.17% (5/81) 3.76 3.6e-05 0.000883
GO:0016407 acetyltransferase activity 7.41% (6/81) 3.28 3.8e-05 0.000907
GO:0008374 O-acyltransferase activity 7.41% (6/81) 3.27 3.9e-05 0.000924
GO:0009507 chloroplast 16.05% (13/81) 1.89 4.2e-05 0.000981
GO:0008970 phospholipase A1 activity 3.7% (3/81) 5.46 4.5e-05 0.001025
GO:1901566 organonitrogen compound biosynthetic process 18.52% (15/81) 1.68 5.6e-05 0.00126
GO:0016042 lipid catabolic process 8.64% (7/81) 2.82 6.4e-05 0.001418
GO:0051235 maintenance of location 6.17% (5/81) 3.58 6.5e-05 0.001422
GO:0000096 sulfur amino acid metabolic process 4.94% (4/81) 4.16 7.8e-05 0.001667
GO:0032787 monocarboxylic acid metabolic process 14.81% (12/81) 1.9 8.2e-05 0.001726
GO:0031012 extracellular matrix 6.17% (5/81) 3.49 8.8e-05 0.001789
GO:0071493 cellular response to UV-B 3.7% (3/81) 5.14 8.6e-05 0.00179
GO:0046461 neutral lipid catabolic process 3.7% (3/81) 5.04 0.000107 0.002113
GO:0046464 acylglycerol catabolic process 3.7% (3/81) 5.04 0.000107 0.002113
GO:0044255 cellular lipid metabolic process 18.52% (15/81) 1.59 0.000112 0.00219
GO:0008216 spermidine metabolic process 3.7% (3/81) 5.01 0.000114 0.002194
GO:0016768 spermine synthase activity 2.47% (2/81) 6.91 0.000118 0.00223
GO:0046339 diacylglycerol metabolic process 3.7% (3/81) 4.98 0.000122 0.002277
GO:0047458 beta-pyrazolylalanine synthase activity 2.47% (2/81) 6.74 0.000151 0.002706
GO:0050234 pyrazolylalanine synthase activity 2.47% (2/81) 6.74 0.000151 0.002706
GO:0050461 L-mimosine synthase activity 2.47% (2/81) 6.74 0.000151 0.002706
GO:0003674 molecular_function 79.01% (64/81) 0.4 0.000187 0.003302
GO:0071704 organic substance metabolic process 56.79% (46/81) 0.62 0.000229 0.003985
GO:0019915 lipid storage 3.7% (3/81) 4.62 0.000256 0.004404
GO:0043231 intracellular membrane-bounded organelle 54.32% (44/81) 0.64 0.000267 0.004525
GO:0004766 spermidine synthase activity 2.47% (2/81) 6.33 0.000276 0.004624
GO:0006595 polyamine metabolic process 3.7% (3/81) 4.57 0.000283 0.004677
GO:0016836 hydro-lyase activity 4.94% (4/81) 3.65 0.000305 0.004971
GO:0043227 membrane-bounded organelle 54.32% (44/81) 0.62 0.000352 0.005682
GO:0009740 gibberellic acid mediated signaling pathway 4.94% (4/81) 3.56 0.000386 0.005938
GO:0032026 response to magnesium ion 2.47% (2/81) 6.11 0.00038 0.005976
GO:0019509 L-methionine salvage from methylthioadenosine 2.47% (2/81) 6.11 0.00038 0.005976
GO:0000904 cell morphogenesis involved in differentiation 11.11% (9/81) 2.01 0.000386 0.005999
GO:0046503 glycerolipid catabolic process 3.7% (3/81) 4.39 0.000407 0.00618
GO:0010960 magnesium ion homeostasis 2.47% (2/81) 6.01 0.000438 0.006569
GO:0010476 gibberellin mediated signaling pathway 4.94% (4/81) 3.45 0.000515 0.007647
GO:0007528 neuromuscular junction development 2.47% (2/81) 5.83 0.000565 0.008295
GO:0048588 developmental cell growth 9.88% (8/81) 2.09 0.000576 0.008361
GO:0048767 root hair elongation 6.17% (5/81) 2.87 0.000631 0.009054
GO:0009694 jasmonic acid metabolic process 4.94% (4/81) 3.36 0.000646 0.009169
GO:0008152 metabolic process 58.02% (47/81) 0.55 0.000656 0.009212
GO:0009611 response to wounding 12.35% (10/81) 1.76 0.000712 0.009784
GO:0005634 nucleus 28.4% (23/81) 0.99 0.00071 0.009868
GO:0071267 L-methionine salvage 2.47% (2/81) 5.59 0.000787 0.0107
GO:0016860 intramolecular oxidoreductase activity 3.7% (3/81) 4.04 0.000829 0.011156
GO:0043102 amino acid salvage 2.47% (2/81) 5.52 0.000868 0.01157
GO:0004124 cysteine synthase activity 2.47% (2/81) 5.39 0.001043 0.013356
GO:0019499 cyanide metabolic process 2.47% (2/81) 5.39 0.001043 0.013356
GO:0050017 L-3-cyanoalanine synthase activity 2.47% (2/81) 5.39 0.001043 0.013356
GO:0071265 L-methionine biosynthetic process 2.47% (2/81) 5.39 0.001043 0.013356
GO:0000325 plant-type vacuole 4.94% (4/81) 3.14 0.001138 0.014024
GO:0009509 chromoplast 2.47% (2/81) 5.33 0.001136 0.014135
GO:0009309 amine biosynthetic process 3.7% (3/81) 3.88 0.001132 0.014209
GO:0042401 cellular biogenic amine biosynthetic process 3.7% (3/81) 3.88 0.001132 0.014209
GO:0006535 cysteine biosynthetic process from serine 2.47% (2/81) 5.21 0.001335 0.01629
GO:0008610 lipid biosynthetic process 13.58% (11/81) 1.54 0.001349 0.016311
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 6.17% (5/81) 2.59 0.001499 0.017966
GO:0008652 cellular amino acid biosynthetic process 6.17% (5/81) 2.58 0.001532 0.018195
GO:0010187 negative regulation of seed germination 3.7% (3/81) 3.72 0.001577 0.018557
GO:0006639 acylglycerol metabolic process 3.7% (3/81) 3.6 0.001975 0.023024
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups 7.41% (6/81) 2.2 0.001999 0.023102
GO:0006638 neutral lipid metabolic process 3.7% (3/81) 3.59 0.002022 0.023166
GO:0046522 S-methyl-5-thioribose kinase activity 1.23% (1/81) 8.91 0.002072 0.023534
GO:0009888 tissue development 11.11% (9/81) 1.64 0.002416 0.027206
GO:0006790 sulfur compound metabolic process 9.88% (8/81) 1.76 0.002481 0.027692
GO:0010090 trichome morphogenesis 3.7% (3/81) 3.46 0.00265 0.029331
GO:0034644 cellular response to UV 3.7% (3/81) 3.43 0.002765 0.030094
GO:0005773 vacuole 12.35% (10/81) 1.5 0.002761 0.030296
GO:0044237 cellular metabolic process 49.38% (40/81) 0.54 0.002836 0.03061
GO:0048506 regulation of timing of meristematic phase transition 4.94% (4/81) 2.74 0.003078 0.032155
GO:0048510 regulation of timing of transition from vegetative to reproductive phase 4.94% (4/81) 2.74 0.003078 0.032155
GO:0016746 acyltransferase activity 7.41% (6/81) 2.07 0.003113 0.032271
GO:0008150 biological_process 76.54% (62/81) 0.31 0.00305 0.03239
GO:0043229 intracellular organelle 55.56% (45/81) 0.48 0.003184 0.032485
GO:0110165 cellular anatomical entity 75.31% (61/81) 0.32 0.003048 0.032628
GO:0003700 DNA-binding transcription factor activity 12.35% (10/81) 1.47 0.003178 0.032683
GO:0005811 lipid droplet 3.7% (3/81) 3.35 0.003256 0.032963
GO:0003824 catalytic activity 48.15% (39/81) 0.54 0.003304 0.033193
GO:0009086 methionine biosynthetic process 2.47% (2/81) 4.52 0.003461 0.0345
GO:0019344 cysteine biosynthetic process 2.47% (2/81) 4.49 0.003625 0.035591
GO:0043226 organelle 55.56% (45/81) 0.47 0.003619 0.035806
GO:0015230 FAD transmembrane transporter activity 1.23% (1/81) 7.91 0.00414 0.035809
GO:0004452 isopentenyl-diphosphate delta-isomerase activity 1.23% (1/81) 7.91 0.00414 0.035809
GO:0010650 positive regulation of cell communication by electrical coupling 1.23% (1/81) 7.91 0.00414 0.035809
GO:0019228 neuronal action potential 1.23% (1/81) 7.91 0.00414 0.035809
GO:0033268 node of Ranvier 1.23% (1/81) 7.91 0.00414 0.035809
GO:0033270 paranode region of axon 1.23% (1/81) 7.91 0.00414 0.035809
GO:0034112 positive regulation of homotypic cell-cell adhesion 1.23% (1/81) 7.91 0.00414 0.035809
GO:0043194 axon initial segment 1.23% (1/81) 7.91 0.00414 0.035809
GO:0045161 neuronal ion channel clustering 1.23% (1/81) 7.91 0.00414 0.035809
GO:0045162 clustering of voltage-gated sodium channels 1.23% (1/81) 7.91 0.00414 0.035809
GO:0098902 regulation of membrane depolarization during action potential 1.23% (1/81) 7.91 0.00414 0.035809
GO:1900825 regulation of membrane depolarization during cardiac muscle cell action potential 1.23% (1/81) 7.91 0.00414 0.035809
GO:1900827 positive regulation of membrane depolarization during cardiac muscle cell action potential 1.23% (1/81) 7.91 0.00414 0.035809
GO:0040034 regulation of development, heterochronic 4.94% (4/81) 2.6 0.004424 0.038007
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 4.94% (4/81) 2.63 0.00409 0.038993
GO:1901420 negative regulation of response to alcohol 4.94% (4/81) 2.63 0.00409 0.038993
GO:1905958 negative regulation of cellular response to alcohol 4.94% (4/81) 2.63 0.00409 0.038993
GO:0005102 signaling receptor binding 6.17% (5/81) 2.26 0.004009 0.039068
GO:0046982 protein heterodimerization activity 4.94% (4/81) 2.62 0.004137 0.039151
GO:0016835 carbon-oxygen lyase activity 4.94% (4/81) 2.57 0.004672 0.039884
GO:0005575 cellular_component 75.31% (61/81) 0.3 0.004824 0.040908
GO:0009836 fruit ripening, climacteric 2.47% (2/81) 4.27 0.004871 0.041043
GO:0046872 metal ion binding 20.99% (17/81) 0.96 0.00537 0.04467
GO:0000902 cell morphogenesis 11.11% (9/81) 1.46 0.005365 0.044914
GO:0006534 cysteine metabolic process 2.47% (2/81) 4.19 0.005458 0.045111
GO:0006864 pyrimidine nucleotide transport 1.23% (1/81) 7.33 0.006204 0.0463
GO:1904947 folate import into mitochondrion 1.23% (1/81) 7.33 0.006204 0.0463
GO:1990548 mitochondrial FAD transmembrane transport 1.23% (1/81) 7.33 0.006204 0.0463
GO:0036360 sorocarp stalk morphogenesis 1.23% (1/81) 7.33 0.006204 0.0463
GO:0050992 dimethylallyl diphosphate biosynthetic process 1.23% (1/81) 7.33 0.006204 0.0463
GO:0004014 adenosylmethionine decarboxylase activity 1.23% (1/81) 7.33 0.006204 0.0463
GO:0006557 obsolete S-adenosylmethioninamine biosynthetic process 1.23% (1/81) 7.33 0.006204 0.0463
GO:0036309 protein localization to M-band 1.23% (1/81) 7.33 0.006204 0.0463
GO:0036371 protein localization to T-tubule 1.23% (1/81) 7.33 0.006204 0.0463
GO:0043034 costamere 1.23% (1/81) 7.33 0.006204 0.0463
GO:0098904 regulation of AV node cell action potential 1.23% (1/81) 7.33 0.006204 0.0463
GO:0098907 regulation of SA node cell action potential 1.23% (1/81) 7.33 0.006204 0.0463
GO:0098910 regulation of atrial cardiac muscle cell action potential 1.23% (1/81) 7.33 0.006204 0.0463
GO:1902259 regulation of delayed rectifier potassium channel activity 1.23% (1/81) 7.33 0.006204 0.0463
GO:1902260 negative regulation of delayed rectifier potassium channel activity 1.23% (1/81) 7.33 0.006204 0.0463
GO:1903817 negative regulation of voltage-gated potassium channel activity 1.23% (1/81) 7.33 0.006204 0.0463
GO:1901607 alpha-amino acid biosynthetic process 4.94% (4/81) 2.48 0.005821 0.047811
GO:0006555 methionine metabolic process 2.47% (2/81) 4.06 0.006503 0.048255
GO:0044271 cellular nitrogen compound biosynthetic process 12.35% (10/81) 1.31 0.006768 0.049107
GO:0010224 response to UV-B 4.94% (4/81) 2.42 0.006812 0.049154
GO:0043169 cation binding 20.99% (17/81) 0.92 0.006743 0.049195
GO:0006563 L-serine metabolic process 2.47% (2/81) 4.03 0.006722 0.049321
GO:0048440 carpel development 2.47% (2/81) 4.03 0.006722 0.049321
GO:0048509 regulation of meristem development 4.94% (4/81) 2.41 0.006944 0.049827
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_136 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_149 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_160 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_163 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_185 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_193 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_200 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_208 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_216 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_238 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_249 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_253 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_1 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_15 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_17 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_43 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_48 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_52 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_76 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_85 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_123 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_125 0.01 Orthogroups with 8 Potato genotypes Compare
Sequences (81) (download table)

InterPro Domains

GO Terms

Family Terms