SOLTUB.AGRIA.G00000002417


Description : Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma


Gene families : OG_02_0018144 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000002417
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_244


Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEA AHRD
BP GO:0000913 preprophase band assembly IEA AHRD
BP GO:0001782 B cell homeostasis IEA AHRD
BP GO:0002759 regulation of antimicrobial humoral response IEA AHRD
MF GO:0005509 calcium ion binding IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005794 Golgi apparatus IEA AHRD
CC GO:0005813 centrosome IEA AHRD
CC GO:0005819 spindle IEA AHRD
CC GO:0005829 cytosol IEA AHRD
CC GO:0009524 phragmoplast IEA AHRD
BP GO:0009826 unidimensional cell growth IEA AHRD
BP GO:0030865 cortical cytoskeleton organization IEA AHRD
BP GO:0032147 activation of protein kinase activity IEA AHRD
BP GO:0035303 regulation of dephosphorylation IEA AHRD
BP GO:0043029 T cell homeostasis IEA AHRD
BP GO:0045579 positive regulation of B cell differentiation IEA AHRD
BP GO:0048536 spleen development IEA AHRD
BP GO:0051900 regulation of mitochondrial depolarization IEA AHRD
Type GO Term Name Evidence Source
MF GO:0000014 single-stranded DNA endodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
CC GO:0000109 nucleotide-excision repair complex IEP Predict GO terms from Neighborhoods
BP GO:0000722 telomere maintenance via recombination IEP Predict GO terms from Neighborhoods
BP GO:0000723 telomere maintenance IEP Predict GO terms from Neighborhoods
BP GO:0000724 double-strand break repair via homologous recombination IEP Predict GO terms from Neighborhoods
BP GO:0000725 recombinational repair IEP Predict GO terms from Neighborhoods
CC GO:0000781 chromosome, telomeric region IEP Predict GO terms from Neighborhoods
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0000963 mitochondrial RNA processing IEP Predict GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0003684 damaged DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003713 transcription coactivator activity IEP Predict GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003730 mRNA 3'-UTR binding IEP Predict GO terms from Neighborhoods
MF GO:0004518 nuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004519 endonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004520 endodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004536 deoxyribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0005669 transcription factor TFIID complex IEP Predict GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Predict GO terms from Neighborhoods
CC GO:0005739 mitochondrion IEP Predict GO terms from Neighborhoods
CC GO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEP Predict GO terms from Neighborhoods
CC GO:0005849 mRNA cleavage factor complex IEP Predict GO terms from Neighborhoods
BP GO:0006120 mitochondrial electron transport, NADH to ubiquinone IEP Predict GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006282 regulation of DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0006284 base-excision repair IEP Predict GO terms from Neighborhoods
BP GO:0006302 double-strand break repair IEP Predict GO terms from Neighborhoods
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predict GO terms from Neighborhoods
BP GO:0006304 DNA modification IEP Predict GO terms from Neighborhoods
BP GO:0006310 DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0006312 mitotic recombination IEP Predict GO terms from Neighborhoods
BP GO:0006378 mRNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:0006379 mRNA cleavage IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006401 RNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006402 mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0007281 germ cell development IEP Predict GO terms from Neighborhoods
BP GO:0007292 female gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0009060 aerobic respiration IEP Predict GO terms from Neighborhoods
BP GO:0010257 NADH dehydrogenase complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0010385 double-stranded methylated DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0010467 gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010639 negative regulation of organelle organization IEP Predict GO terms from Neighborhoods
BP GO:0010835 regulation of protein ADP-ribosylation IEP Predict GO terms from Neighborhoods
BP GO:0010836 negative regulation of protein ADP-ribosylation IEP Predict GO terms from Neighborhoods
BP GO:0010921 regulation of phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0010922 positive regulation of phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Predict GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016073 snRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016180 snRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0016251 RNA polymerase II general transcription initiation factor activity IEP Predict GO terms from Neighborhoods
BP GO:0016553 base conversion or substitution editing IEP Predict GO terms from Neighborhoods
BP GO:0016554 cytidine to uridine editing IEP Predict GO terms from Neighborhoods
BP GO:0016556 mRNA modification IEP Predict GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predict GO terms from Neighborhoods
MF GO:0016922 nuclear receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0017025 TBP-class protein binding IEP Predict GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0017070 U6 snRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0017148 negative regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019646 aerobic electron transport chain IEP Predict GO terms from Neighborhoods
BP GO:0021587 cerebellum morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0021766 hippocampus development IEP Predict GO terms from Neighborhoods
BP GO:0022900 electron transport chain IEP Predict GO terms from Neighborhoods
BP GO:0022904 respiratory electron transport chain IEP Predict GO terms from Neighborhoods
BP GO:0031123 RNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031124 mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031425 chloroplast RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0032200 telomere organization IEP Predict GO terms from Neighborhoods
BP GO:0032204 regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
BP GO:0032205 negative regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
MF GO:0032356 oxidized DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP Predict GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0033194 response to hydroperoxide IEP Predict GO terms from Neighborhoods
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034472 snRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0034477 U6 snRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0035306 positive regulation of dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0035510 DNA dealkylation IEP Predict GO terms from Neighborhoods
MF GO:0042809 nuclear vitamin D receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0043487 regulation of RNA stability IEP Predict GO terms from Neighborhoods
BP GO:0043488 regulation of mRNA stability IEP Predict GO terms from Neighborhoods
BP GO:0043631 RNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:0043923 positive regulation by host of viral transcription IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
BP GO:0044728 DNA methylation or demethylation IEP Predict GO terms from Neighborhoods
BP GO:0045333 cellular respiration IEP Predict GO terms from Neighborhoods
BP GO:0045739 positive regulation of DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0046966 nuclear thyroid hormone receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0047485 protein N-terminus binding IEP Predict GO terms from Neighborhoods
BP GO:0048477 oogenesis IEP Predict GO terms from Neighborhoods
MF GO:0050265 RNA uridylyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0050779 RNA destabilization IEP Predict GO terms from Neighborhoods
BP GO:0050879 multicellular organismal movement IEP Predict GO terms from Neighborhoods
BP GO:0050881 musculoskeletal movement IEP Predict GO terms from Neighborhoods
BP GO:0050882 voluntary musculoskeletal movement IEP Predict GO terms from Neighborhoods
BP GO:0050905 neuromuscular process IEP Predict GO terms from Neighborhoods
BP GO:0051053 negative regulation of DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051054 positive regulation of DNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0051082 unfolded protein binding IEP Predict GO terms from Neighborhoods
BP GO:0051105 regulation of DNA ligation IEP Predict GO terms from Neighborhoods
BP GO:0051106 positive regulation of DNA ligation IEP Predict GO terms from Neighborhoods
BP GO:0051123 RNA polymerase II preinitiation complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0051248 negative regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051254 positive regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051340 regulation of ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0051345 positive regulation of hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0051351 positive regulation of ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0051851 modulation by host of symbiont process IEP Predict GO terms from Neighborhoods
BP GO:0060147 regulation of post-transcriptional gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0060148 positive regulation of post-transcriptional gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0060966 regulation of gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0061013 regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0061014 positive regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0061157 mRNA destabilization IEP Predict GO terms from Neighborhoods
MF GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding IEP Predict GO terms from Neighborhoods
BP GO:0061819 telomeric DNA-containing double minutes formation IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0070522 ERCC4-ERCC1 complex IEP Predict GO terms from Neighborhoods
MF GO:0070566 adenylyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0070569 uridylyltransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0070578 RISC-loading complex IEP Predict GO terms from Neighborhoods
BP GO:0070897 transcription preinitiation complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0070988 demethylation IEP Predict GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0080111 DNA demethylation IEP Predict GO terms from Neighborhoods
BP GO:0080156 mitochondrial mRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Predict GO terms from Neighborhoods
CC GO:0098687 chromosomal region IEP Predict GO terms from Neighborhoods
BP GO:0098787 mRNA cleavage involved in mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0098789 pre-mRNA cleavage required for polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:0140053 mitochondrial gene expression IEP Predict GO terms from Neighborhoods
MF GO:0140223 general transcription initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0140296 general transcription initiation factor binding IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Predict GO terms from Neighborhoods
BP GO:1900368 regulation of post-transcriptional gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:1900370 positive regulation of post-transcriptional gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:1900864 mitochondrial RNA modification IEP Predict GO terms from Neighborhoods
BP GO:1900865 chloroplast RNA modification IEP Predict GO terms from Neighborhoods
BP GO:1901968 regulation of polynucleotide 3'-phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:1901969 positive regulation of polynucleotide 3'-phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:1901971 regulation of DNA-5-methylcytosine glycosylase activity IEP Predict GO terms from Neighborhoods
BP GO:1901972 positive regulation of DNA-5-methylcytosine glycosylase activity IEP Predict GO terms from Neighborhoods
BP GO:1902544 regulation of DNA N-glycosylase activity IEP Predict GO terms from Neighborhoods
BP GO:1902546 positive regulation of DNA N-glycosylase activity IEP Predict GO terms from Neighborhoods
CC GO:1902555 endoribonuclease complex IEP Predict GO terms from Neighborhoods
BP GO:1903313 positive regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903516 regulation of single strand break repair IEP Predict GO terms from Neighborhoods
BP GO:1903518 positive regulation of single strand break repair IEP Predict GO terms from Neighborhoods
BP GO:1904353 regulation of telomere capping IEP Predict GO terms from Neighborhoods
BP GO:1904354 negative regulation of telomere capping IEP Predict GO terms from Neighborhoods
BP GO:1904505 regulation of telomere maintenance in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:1904506 negative regulation of telomere maintenance in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:1904875 regulation of DNA ligase activity IEP Predict GO terms from Neighborhoods
BP GO:1904877 positive regulation of DNA ligase activity IEP Predict GO terms from Neighborhoods
CC GO:1905348 endonuclease complex IEP Predict GO terms from Neighborhoods
BP GO:1905764 regulation of protection from non-homologous end joining at telomere IEP Predict GO terms from Neighborhoods
BP GO:1905765 negative regulation of protection from non-homologous end joining at telomere IEP Predict GO terms from Neighborhoods
BP GO:1990074 polyuridylation-dependent mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1990414 replication-born double-strand break repair via sister chromatid exchange IEP Predict GO terms from Neighborhoods
MF GO:1990599 3' overhang single-stranded DNA endodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2001020 regulation of response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:2001021 negative regulation of response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:2001022 positive regulation of response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:2001251 negative regulation of chromosome organization IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 301 321
IPR011992 EF-hand-dom_pair 162 321
IPR011992 EF-hand-dom_pair 281 443
No external refs found!