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Description : Nucleic acid-binding, OB-fold-like protein
Gene families : OG_02_0009920 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000025669 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_220 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003676 | nucleic acid binding | None | Extended |
| MF | GO:0003723 | RNA binding | None | Extended |
| MF | GO:0003729 | mRNA binding | IEA | AHRD |
| MF | GO:0005488 | binding | None | Extended |
| CC | GO:0005575 | cellular_component | None | Extended |
| CC | GO:0005829 | cytosol | IEA | AHRD |
| MF | GO:0097159 | organic cyclic compound binding | None | Extended |
| CC | GO:0110165 | cellular anatomical entity | None | Extended |
| MF | GO:1901363 | heterocyclic compound binding | None | Extended |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000153 | cytoplasmic ubiquitin ligase complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000835 | ER ubiquitin ligase complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000836 | Hrd1p ubiquitin ligase complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000839 | Hrd1p ubiquitin ligase ERAD-L complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001967 | suckling behavior | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0002020 | protease binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002064 | epithelial cell development | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003714 | transcription corepressor activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005047 | signal recognition particle binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005769 | early endosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005770 | late endosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006486 | protein glycosylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006487 | protein N-linked glycosylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006508 | proteolysis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006997 | nucleus organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007000 | nucleolus organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007631 | feeding behavior | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010498 | proteasomal protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016413 | O-acetyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0017126 | nucleologenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018196 | peptidyl-asparagine modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018279 | protein N-linked glycosylation via asparagine | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030163 | protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030176 | integral component of endoplasmic reticulum membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030307 | positive regulation of cell growth | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030433 | ubiquitin-dependent ERAD pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030707 | ovarian follicle cell development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030968 | endoplasmic reticulum unfolded protein response | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031227 | intrinsic component of endoplasmic reticulum membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032387 | negative regulation of intracellular transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033157 | regulation of intracellular protein transport | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0034515 | proteasome storage granule | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0035064 | methylated histone binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0036503 | ERAD pathway | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0042175 | nuclear outer membrane-endoplasmic reticulum membrane network | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043413 | macromolecule glycosylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045727 | positive regulation of translation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051224 | negative regulation of protein transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0051787 | misfolded protein binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0052547 | regulation of peptidase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0052548 | regulation of endopeptidase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070085 | glycosylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070861 | regulation of protein exit from endoplasmic reticulum | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070862 | negative regulation of protein exit from endoplasmic reticulum | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071472 | cellular response to salt stress | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090317 | negative regulation of intracellular protein transport | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140030 | modification-dependent protein binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140034 | methylation-dependent protein binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0140534 | endoplasmic reticulum protein-containing complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903828 | negative regulation of protein localization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904152 | regulation of retrograde protein transport, ER to cytosol | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904153 | negative regulation of retrograde protein transport, ER to cytosol | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904950 | negative regulation of establishment of protein localization | IEP | Predict GO terms from Neighborhoods |
| MF | GO:1990381 | ubiquitin-specific protease binding | IEP | Predict GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR012340 | NA-bd_OB-fold | 14 | 152 |
| No external refs found! |
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