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  5. SOLTUB.AGRIA.G00000038458

SOLTUB.AGRIA.G00000038458


Description : RNA binding protein-like protein


Gene families : OG_02_0011301 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000038458
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_59


Type GO Term Name Evidence Source
BP GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA AHRD
CC GO:0000794 condensed nuclear chromosome IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
MF GO:0019843 rRNA binding IEA AHRD
CC GO:0030687 preribosome, large subunit precursor IEA AHRD
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Type GO Term Name Evidence Source
CC GO:0000118 histone deacetylase complex IEP Predict GO terms from Neighborhoods
BP GO:0000255 allantoin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0000414 regulation of histone H3-K36 methylation IEP Predict GO terms from Neighborhoods
CC GO:0000792 heterochromatin IEP Predict GO terms from Neighborhoods
MF GO:0001221 transcription coregulator binding IEP Predict GO terms from Neighborhoods
MF GO:0001222 transcription corepressor binding IEP Predict GO terms from Neighborhoods
BP GO:0001702 gastrulation with mouth forming second IEP Predict GO terms from Neighborhoods
BP GO:0001819 positive regulation of cytokine production IEP Predict GO terms from Neighborhoods
BP GO:0002009 morphogenesis of an epithelium IEP Predict GO terms from Neighborhoods
BP GO:0002250 adaptive immune response IEP Predict GO terms from Neighborhoods
BP GO:0002443 leukocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002449 lymphocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002456 T cell mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002458 peripheral T cell tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains IEP Predict GO terms from Neighborhoods
BP GO:0002461 tolerance induction dependent upon immune response IEP Predict GO terms from Neighborhoods
BP GO:0002465 peripheral tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002507 tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002508 central tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002509 central tolerance induction to self antigen IEP Predict GO terms from Neighborhoods
BP GO:0002513 tolerance induction to self antigen IEP Predict GO terms from Neighborhoods
BP GO:0002517 T cell tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002685 regulation of leukocyte migration IEP Predict GO terms from Neighborhoods
MF GO:0003714 transcription corepressor activity IEP Predict GO terms from Neighborhoods
MF GO:0004854 xanthine dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0004855 xanthine oxidase activity IEP Predict GO terms from Neighborhoods
CC GO:0005700 polytene chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005765 lysosomal membrane IEP Predict GO terms from Neighborhoods
CC GO:0005798 Golgi-associated vesicle IEP Predict GO terms from Neighborhoods
BP GO:0006144 purine nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006145 purine nucleobase catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006147 guanine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006152 purine nucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006195 purine nucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006623 protein targeting to vacuole IEP Predict GO terms from Neighborhoods
BP GO:0006801 superoxide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006906 vesicle fusion IEP Predict GO terms from Neighborhoods
BP GO:0006959 humoral immune response IEP Predict GO terms from Neighborhoods
BP GO:0007041 lysosomal transport IEP Predict GO terms from Neighborhoods
BP GO:0007063 regulation of sister chromatid cohesion IEP Predict GO terms from Neighborhoods
BP GO:0007369 gastrulation IEP Predict GO terms from Neighborhoods
BP GO:0007568 aging IEP Predict GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008276 protein methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0008333 endosome to lysosome transport IEP Predict GO terms from Neighborhoods
BP GO:0009112 nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009114 hypoxanthine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009115 xanthine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009116 nucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009119 ribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009120 deoxyribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009123 nucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009125 nucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009128 purine nucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009151 purine deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009154 purine ribonucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009155 purine deoxyribonucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009158 ribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009159 deoxyribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009162 deoxyribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009164 nucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009166 nucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009169 purine ribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009170 purine deoxyribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009172 purine deoxyribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009261 ribonucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009264 deoxyribonucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010044 response to aluminum ion IEP Predict GO terms from Neighborhoods
CC GO:0015630 microtubule cytoskeleton IEP Predict GO terms from Neighborhoods
BP GO:0016236 macroautophagy IEP Predict GO terms from Neighborhoods
MF GO:0016278 lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0016580 Sin3 complex IEP Predict GO terms from Neighborhoods
CC GO:0016581 NuRD complex IEP Predict GO terms from Neighborhoods
MF GO:0016623 oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Predict GO terms from Neighborhoods
MF GO:0016662 oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predict GO terms from Neighborhoods
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016727 oxidoreductase activity, acting on CH or CH2 groups, oxygen as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predict GO terms from Neighborhoods
MF GO:0016922 nuclear receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0017015 regulation of transforming growth factor beta receptor signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0017053 transcription repressor complex IEP Predict GO terms from Neighborhoods
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0019692 deoxyribose phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0021895 cerebral cortex neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0021953 central nervous system neuron differentiation IEP Predict GO terms from Neighborhoods
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predict GO terms from Neighborhoods
CC GO:0030123 AP-3 adaptor complex IEP Predict GO terms from Neighborhoods
CC GO:0030135 coated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0030136 clathrin-coated vesicle IEP Predict GO terms from Neighborhoods
BP GO:0030182 neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0030261 chromosome condensation IEP Predict GO terms from Neighborhoods
MF GO:0030331 nuclear estrogen receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0030336 negative regulation of cell migration IEP Predict GO terms from Neighborhoods
BP GO:0030510 regulation of BMP signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0030514 negative regulation of BMP signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0030856 regulation of epithelial cell differentiation IEP Predict GO terms from Neighborhoods
CC GO:0030897 HOPS complex IEP Predict GO terms from Neighborhoods
MF GO:0031491 nucleosome binding IEP Predict GO terms from Neighborhoods
CC GO:0031902 late endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0032268 regulation of cellular protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032642 regulation of chemokine production IEP Predict GO terms from Neighborhoods
BP GO:0032722 positive regulation of chemokine production IEP Predict GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Predict GO terms from Neighborhoods
BP GO:0033135 regulation of peptidyl-serine phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0034058 endosomal vesicle fusion IEP Predict GO terms from Neighborhoods
BP GO:0034465 response to carbon monoxide IEP Predict GO terms from Neighborhoods
BP GO:0034612 response to tumor necrosis factor IEP Predict GO terms from Neighborhoods
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0034708 methyltransferase complex IEP Predict GO terms from Neighborhoods
MF GO:0035064 methylated histone binding IEP Predict GO terms from Neighborhoods
CC GO:0035097 histone methyltransferase complex IEP Predict GO terms from Neighborhoods
BP GO:0040013 negative regulation of locomotion IEP Predict GO terms from Neighborhoods
MF GO:0042054 histone methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0042278 purine nucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042454 ribonucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042554 superoxide anion generation IEP Predict GO terms from Neighborhoods
BP GO:0042766 obsolete nucleosome mobilization IEP Predict GO terms from Neighborhoods
MF GO:0042799 histone methyltransferase activity (H4-K20 specific) IEP Predict GO terms from Neighborhoods
MF GO:0042826 histone deacetylase binding IEP Predict GO terms from Neighborhoods
MF GO:0042974 nuclear retinoic acid receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0043383 negative T cell selection IEP Predict GO terms from Neighborhoods
MF GO:0043546 molybdopterin cofactor binding IEP Predict GO terms from Neighborhoods
BP GO:0043966 histone H3 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0043967 histone H4 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0045058 T cell selection IEP Predict GO terms from Neighborhoods
BP GO:0045060 negative thymic T cell selection IEP Predict GO terms from Neighborhoods
BP GO:0045061 thymic T cell selection IEP Predict GO terms from Neighborhoods
BP GO:0045595 regulation of cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045875 negative regulation of sister chromatid cohesion IEP Predict GO terms from Neighborhoods
BP GO:0046098 guanine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046100 hypoxanthine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046110 xanthine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046113 nucleobase catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046121 deoxyribonucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046122 purine deoxyribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046124 purine deoxyribonucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046128 purine ribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046130 purine ribonucleoside catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0046332 SMAD binding IEP Predict GO terms from Neighborhoods
BP GO:0046386 deoxyribose phosphate catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0046965 nuclear retinoid X receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0046966 nuclear thyroid hormone receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0046975 histone methyltransferase activity (H3-K36 specific) IEP Predict GO terms from Neighborhoods
MF GO:0050421 nitrite reductase (NO-forming) activity IEP Predict GO terms from Neighborhoods
MF GO:0050660 flavin adenine dinucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0050681 nuclear androgen receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0051101 regulation of DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predict GO terms from Neighborhoods
BP GO:0061025 membrane fusion IEP Predict GO terms from Neighborhoods
MF GO:0061628 H3K27me3 modified histone binding IEP Predict GO terms from Neighborhoods
MF GO:0070410 co-SMAD binding IEP Predict GO terms from Neighborhoods
MF GO:0070412 R-SMAD binding IEP Predict GO terms from Neighborhoods
BP GO:0070555 response to interleukin-1 IEP Predict GO terms from Neighborhoods
MF GO:0070577 lysine-acetylated histone binding IEP Predict GO terms from Neighborhoods
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predict GO terms from Neighborhoods
CC GO:0070822 Sin3-type complex IEP Predict GO terms from Neighborhoods
BP GO:0071347 cellular response to interleukin-1 IEP Predict GO terms from Neighborhoods
BP GO:0071356 cellular response to tumor necrosis factor IEP Predict GO terms from Neighborhoods
BP GO:0071675 regulation of mononuclear cell migration IEP Predict GO terms from Neighborhoods
BP GO:0071922 regulation of cohesin loading IEP Predict GO terms from Neighborhoods
BP GO:0071923 negative regulation of cohesin loading IEP Predict GO terms from Neighborhoods
BP GO:0072523 purine-containing compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0072666 establishment of protein localization to vacuole IEP Predict GO terms from Neighborhoods
BP GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0090101 negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0090174 organelle membrane fusion IEP Predict GO terms from Neighborhoods
BP GO:0090287 regulation of cellular response to growth factor stimulus IEP Predict GO terms from Neighborhoods
BP GO:0090288 negative regulation of cellular response to growth factor stimulus IEP Predict GO terms from Neighborhoods
CC GO:0090545 CHD-type complex IEP Predict GO terms from Neighborhoods
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Predict GO terms from Neighborhoods
BP GO:0097184 response to azide IEP Predict GO terms from Neighborhoods
BP GO:0097536 thymus epithelium morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:0098809 nitrite reductase activity IEP Predict GO terms from Neighborhoods
CC GO:0099023 vesicle tethering complex IEP Predict GO terms from Neighborhoods
BP GO:0120186 negative regulation of protein localization to chromatin IEP Predict GO terms from Neighborhoods
MF GO:0140030 modification-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140033 acetylation-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140034 methylation-dependent protein binding IEP Predict GO terms from Neighborhoods
BP GO:1901292 nucleoside phosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901658 glycosyl compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901796 regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1901798 positive regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902531 regulation of intracellular signal transduction IEP Predict GO terms from Neighborhoods
BP GO:1903025 regulation of RNA polymerase II regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
BP GO:1903828 negative regulation of protein localization IEP Predict GO terms from Neighborhoods
BP GO:1903844 regulation of cellular response to transforming growth factor beta stimulus IEP Predict GO terms from Neighborhoods
CC GO:1904949 ATPase complex IEP Predict GO terms from Neighborhoods
BP GO:1905634 regulation of protein localization to chromatin IEP Predict GO terms from Neighborhoods
BP GO:2000146 negative regulation of cell motility IEP Predict GO terms from Neighborhoods
BP GO:2000401 regulation of lymphocyte migration IEP Predict GO terms from Neighborhoods
BP GO:2000404 regulation of T cell migration IEP Predict GO terms from Neighborhoods
BP GO:2000410 regulation of thymocyte migration IEP Predict GO terms from Neighborhoods
BP GO:2000677 regulation of transcription regulatory region DNA binding IEP Predict GO terms from Neighborhoods
BP GO:2001251 negative regulation of chromosome organization IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000504 RRM_dom 58 125
IPR035979 RBD_domain_sf 47 148
No external refs found!