SOLTUB.AGRIA.G00000038485

Description : Vacuolar protein sorting-associated protein 41 like

Gene families : OG_02_0002210 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000038485
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_83

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000038452	No alias	Vacuolar sorting-associated protein 41	0.08	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000038452	No alias	Vacuolar sorting-associated protein 41	0.08	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000038452	No alias	Vacuolar sorting-associated protein 41	0.08	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005765	lysosomal membrane	IEA	AHRD
CC	GO:0005768	endosome	None	Extended
CC	GO:0005769	early endosome	IEA	AHRD
CC	GO:0005774	vacuolar membrane	None	Extended
CC	GO:0005798	Golgi-associated vesicle	IEA	AHRD
CC	GO:0005856	cytoskeleton	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006623	protein targeting to vacuole	IEA	AHRD
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006906	vesicle fusion	None	Extended
BP	GO:0006914	autophagy	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007034	vacuolar transport	None	Extended
BP	GO:0007041	lysosomal transport	None	Extended
BP	GO:0007154	cell communication	None	Extended
MF	GO:0008017	microtubule binding	IEA	AHRD
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008333	endosome to lysosome transport	IEA	AHRD
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009267	cellular response to starvation	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
CC	GO:0010008	endosome membrane	None	Extended
CC	GO:0012506	vesicle membrane	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0015630	microtubule cytoskeleton	IEA	AHRD
MF	GO:0015631	tubulin binding	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016050	vesicle organization	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016236	macroautophagy	IEA	AHRD
CC	GO:0030119	AP-type membrane coat adaptor complex	None	Extended
CC	GO:0030123	AP-3 adaptor complex	IEA	AHRD
CC	GO:0030135	coated vesicle	None	Extended
CC	GO:0030136	clathrin-coated vesicle	IEA	AHRD
CC	GO:0030659	cytoplasmic vesicle membrane	None	Extended
CC	GO:0030897	HOPS complex	IEA	AHRD
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
BP	GO:0031669	cellular response to nutrient levels	None	Extended
CC	GO:0031902	late endosome membrane	IEA	AHRD
CC	GO:0031982	vesicle	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034058	endosomal vesicle fusion	IEA	AHRD
BP	GO:0042594	response to starvation	None	Extended
MF	GO:0042802	identical protein binding	IEA	AHRD
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048284	organelle fusion	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0061025	membrane fusion	None	Extended
BP	GO:0061919	process utilizing autophagic mechanism	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072665	protein localization to vacuole	None	Extended
BP	GO:0072666	establishment of protein localization to vacuole	None	Extended
BP	GO:0090174	organelle membrane fusion	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098852	lytic vacuole membrane	None	Extended
CC	GO:0099023	vesicle tethering complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000118	histone deacetylase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000122	negative regulation of transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0000414	regulation of histone H3-K36 methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0000785	chromatin	IEP	Predict GO terms from Neighborhoods
CC	GO:0000792	heterochromatin	IEP	Predict GO terms from Neighborhoods
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001221	transcription coregulator binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001222	transcription corepressor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001702	gastrulation with mouth forming second	IEP	Predict GO terms from Neighborhoods
BP	GO:0001817	regulation of cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0001819	positive regulation of cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0001932	regulation of protein phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002009	morphogenesis of an epithelium	IEP	Predict GO terms from Neighborhoods
BP	GO:0002250	adaptive immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002252	immune effector process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002443	leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002449	lymphocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002456	T cell mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002458	peripheral T cell tolerance induction	IEP	Predict GO terms from Neighborhoods
BP	GO:0002460	adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	IEP	Predict GO terms from Neighborhoods
BP	GO:0002461	tolerance induction dependent upon immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002465	peripheral tolerance induction	IEP	Predict GO terms from Neighborhoods
BP	GO:0002507	tolerance induction	IEP	Predict GO terms from Neighborhoods
BP	GO:0002508	central tolerance induction	IEP	Predict GO terms from Neighborhoods
BP	GO:0002509	central tolerance induction to self antigen	IEP	Predict GO terms from Neighborhoods
BP	GO:0002513	tolerance induction to self antigen	IEP	Predict GO terms from Neighborhoods
BP	GO:0002517	T cell tolerance induction	IEP	Predict GO terms from Neighborhoods
BP	GO:0002685	regulation of leukocyte migration	IEP	Predict GO terms from Neighborhoods
MF	GO:0003712	transcription coregulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003714	transcription corepressor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004353	glutamate dehydrogenase [NAD(P)+] activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004354	glutamate dehydrogenase (NADP+) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005543	phospholipid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005667	transcription regulator complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005700	polytene chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005813	centrosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005815	microtubule organizing center	IEP	Predict GO terms from Neighborhoods
BP	GO:0006473	protein acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006475	internal protein amino acid acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006536	glutamate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006537	glutamate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006959	humoral immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0007063	regulation of sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007369	gastrulation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008134	transcription factor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008170	N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008276	protein methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008285	negative regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010639	negative regulation of organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010948	negative regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016570	histone modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0016573	histone acetylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0016580	Sin3 complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0016581	NuRD complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0016639	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016922	nuclear receptor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0017015	regulation of transforming growth factor beta receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0017053	transcription repressor complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018205	peptidyl-lysine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0021895	cerebral cortex neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0021953	central nervous system neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030182	neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030261	chromosome condensation	IEP	Predict GO terms from Neighborhoods
MF	GO:0030331	nuclear estrogen receptor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030334	regulation of cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0030510	regulation of BMP signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0030514	negative regulation of BMP signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0031056	regulation of histone modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0031060	regulation of histone methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0031491	nucleosome binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032642	regulation of chemokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032722	positive regulation of chemokine production	IEP	Predict GO terms from Neighborhoods
CC	GO:0032993	protein-DNA complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0033044	regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0033135	regulation of peptidyl-serine phosphorylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0034708	methyltransferase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0035064	methylated histone binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0035091	phosphatidylinositol binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0035097	histone methyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0040012	regulation of locomotion	IEP	Predict GO terms from Neighborhoods
MF	GO:0042054	histone methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042325	regulation of phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042766	obsolete nucleosome mobilization	IEP	Predict GO terms from Neighborhoods
MF	GO:0042799	histone methyltransferase activity (H4-K20 specific)	IEP	Predict GO terms from Neighborhoods
MF	GO:0042826	histone deacetylase binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0042974	nuclear retinoic acid receptor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043383	negative T cell selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0043543	protein acylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043966	histone H3 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043967	histone H4 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045058	T cell selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0045060	negative thymic T cell selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0045061	thymic T cell selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0045786	negative regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045875	negative regulation of sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
MF	GO:0046332	SMAD binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0046965	nuclear retinoid X receptor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0046966	nuclear thyroid hormone receptor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0046975	histone methyltransferase activity (H3-K36 specific)	IEP	Predict GO terms from Neighborhoods
BP	GO:0048598	embryonic morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048729	tissue morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0050681	nuclear androgen receptor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051098	regulation of binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051101	regulation of DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051129	negative regulation of cellular component organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0061628	H3K27me3 modified histone binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0070410	co-SMAD binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0070412	R-SMAD binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0070822	Sin3-type complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071675	regulation of mononuclear cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0071922	regulation of cohesin loading	IEP	Predict GO terms from Neighborhoods
BP	GO:0071923	negative regulation of cohesin loading	IEP	Predict GO terms from Neighborhoods
BP	GO:0090092	regulation of transmembrane receptor protein serine/threonine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090101	negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090287	regulation of cellular response to growth factor stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0090288	negative regulation of cellular response to growth factor stimulus	IEP	Predict GO terms from Neighborhoods
CC	GO:0090545	CHD-type complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0097536	thymus epithelium morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0120186	negative regulation of protein localization to chromatin	IEP	Predict GO terms from Neighborhoods
MF	GO:0140030	modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0140034	methylation-dependent protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0140297	DNA-binding transcription factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901796	regulation of signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:1901798	positive regulation of signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:1902533	positive regulation of intracellular signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:1903025	regulation of RNA polymerase II regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1903828	negative regulation of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:1903844	regulation of cellular response to transforming growth factor beta stimulus	IEP	Predict GO terms from Neighborhoods
CC	GO:1904949	ATPase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1905634	regulation of protein localization to chromatin	IEP	Predict GO terms from Neighborhoods
BP	GO:2000145	regulation of cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:2000401	regulation of lymphocyte migration	IEP	Predict GO terms from Neighborhoods
BP	GO:2000404	regulation of T cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:2000410	regulation of thymocyte migration	IEP	Predict GO terms from Neighborhoods
BP	GO:2000677	regulation of transcription regulatory region DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2001251	negative regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036322	WD40_repeat_dom_sf	50	256
IPR000547	Clathrin_H-chain/VPS_repeat	615	751

External Links

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SOLTUB.AGRIA.G00000038485

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation