SOLTUB.AGRIA.G00000006047


Description : Regulator of chromosome condensation (RCC1) family protein


Gene families : OG_02_0024167 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006047
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_197


Type GO Term Name Evidence Source
BP GO:0000422 autophagy of mitochondrion IEA AHRD
BP GO:0001974 blood vessel remodeling IEA AHRD
BP GO:0002718 regulation of cytokine production involved in immune response IEA AHRD
BP GO:0003006 developmental process involved in reproduction IEA AHRD
MF GO:0004842 ubiquitin-protein transferase activity IEA AHRD
MF GO:0005085 guanyl-nucleotide exchange factor activity IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005776 autophagosome IEA AHRD
CC GO:0005930 axoneme IEA AHRD
BP GO:0006974 cellular response to DNA damage stimulus IEA AHRD
BP GO:0009267 cellular response to starvation IEA AHRD
BP GO:0009968 negative regulation of signal transduction IEA AHRD
BP GO:0010150 leaf senescence IEA AHRD
BP GO:0019883 antigen processing and presentation of endogenous antigen IEA AHRD
BP GO:0030163 protein catabolic process IEA AHRD
BP GO:0031397 negative regulation of protein ubiquitination IEA AHRD
CC GO:0031981 nuclear lumen IEA AHRD
CC GO:0032991 protein-containing complex IEA AHRD
CC GO:0034045 phagophore assembly site membrane IEA AHRD
MF GO:0035091 phosphatidylinositol binding IEA AHRD
BP GO:0035973 aggrephagy IEA AHRD
BP GO:0039689 negative stranded viral RNA replication IEA AHRD
BP GO:0042311 vasodilation IEA AHRD
BP GO:0043066 negative regulation of apoptotic process IEA AHRD
CC GO:0044233 mitochondria-associated endoplasmic reticulum membrane IEA AHRD
BP GO:0045060 negative thymic T cell selection IEA AHRD
BP GO:0048840 otolith development IEA AHRD
BP GO:0050765 negative regulation of phagocytosis IEA AHRD
BP GO:0050832 defense response to fungus IEA AHRD
BP GO:0051279 regulation of release of sequestered calcium ion into cytosol IEA AHRD
BP GO:0055015 ventricular cardiac muscle cell development IEA AHRD
BP GO:0060047 heart contraction IEA AHRD
BP GO:0061739 protein lipidation involved in autophagosome assembly IEA AHRD
BP GO:0070257 positive regulation of mucus secretion IEA AHRD
MF GO:0070300 phosphatidic acid binding IEA AHRD
BP GO:0071500 cellular response to nitrosative stress IEA AHRD
BP GO:0080134 regulation of response to stress IEA AHRD
BP GO:0090304 nucleic acid metabolic process IEA AHRD
BP GO:1902017 regulation of cilium assembly IEA AHRD
BP GO:2000378 negative regulation of reactive oxygen species metabolic process IEA AHRD
BP GO:2000619 negative regulation of histone H4-K16 acetylation IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000740 nuclear membrane fusion IEP Predict GO terms from Neighborhoods
BP GO:0000741 karyogamy IEP Predict GO terms from Neighborhoods
MF GO:0001671 ATPase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0001701 in utero embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0001933 negative regulation of protein phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0001959 regulation of cytokine-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0001961 positive regulation of cytokine-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0002119 nematode larval development IEP Predict GO terms from Neighborhoods
BP GO:0002164 larval development IEP Predict GO terms from Neighborhoods
MF GO:0004180 carboxypeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004181 metallocarboxypeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004312 fatty acid synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0005102 signaling receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0005113 patched binding IEP Predict GO terms from Neighborhoods
MF GO:0005544 calcium-dependent phospholipid binding IEP Predict GO terms from Neighborhoods
CC GO:0005788 endoplasmic reticulum lumen IEP Predict GO terms from Neighborhoods
CC GO:0005925 focal adhesion IEP Predict GO terms from Neighborhoods
BP GO:0006458 'de novo' protein folding IEP Predict GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0007167 enzyme-linked receptor protein signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0007349 cellularization IEP Predict GO terms from Neighborhoods
BP GO:0007569 obsolete cell aging IEP Predict GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Predict GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008235 metalloexopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008238 exopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0008361 regulation of cell size IEP Predict GO terms from Neighborhoods
BP GO:0008589 regulation of smoothened signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009270 response to humidity IEP Predict GO terms from Neighborhoods
BP GO:0009558 embryo sac cellularization IEP Predict GO terms from Neighborhoods
BP GO:0010197 polar nucleus fusion IEP Predict GO terms from Neighborhoods
BP GO:0010198 synergid death IEP Predict GO terms from Neighborhoods
BP GO:0010623 programmed cell death involved in cell development IEP Predict GO terms from Neighborhoods
BP GO:0010721 negative regulation of cell development IEP Predict GO terms from Neighborhoods
BP GO:0010803 regulation of tumor necrosis factor-mediated signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0015035 protein-disulfide reductase activity IEP Predict GO terms from Neighborhoods
MF GO:0015036 disulfide oxidoreductase activity IEP Predict GO terms from Neighborhoods
MF GO:0016297 acyl-[acyl-carrier-protein] hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predict GO terms from Neighborhoods
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016790 thiolester hydrolase activity IEP Predict GO terms from Neighborhoods
CC GO:0030055 cell-substrate junction IEP Predict GO terms from Neighborhoods
BP GO:0030433 ubiquitin-dependent ERAD pathway IEP Predict GO terms from Neighborhoods
MF GO:0030544 Hsp70 protein binding IEP Predict GO terms from Neighborhoods
MF GO:0030971 receptor tyrosine kinase binding IEP Predict GO terms from Neighborhoods
BP GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032781 positive regulation of ATP-dependent activity IEP Predict GO terms from Neighborhoods
CC GO:0034663 endoplasmic reticulum chaperone complex IEP Predict GO terms from Neighborhoods
BP GO:0034975 protein folding in endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0036503 ERAD pathway IEP Predict GO terms from Neighborhoods
BP GO:0038127 ERBB signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0038128 ERBB2 signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0040039 inductive cell migration IEP Predict GO terms from Neighborhoods
BP GO:0042326 negative regulation of phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0043122 regulation of I-kappaB kinase/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:0043392 negative regulation of DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0043462 regulation of ATP-dependent activity IEP Predict GO terms from Neighborhoods
BP GO:0045595 regulation of cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045664 regulation of neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045666 positive regulation of neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045793 positive regulation of cell size IEP Predict GO terms from Neighborhoods
BP GO:0045879 negative regulation of smoothened signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0048306 calcium-dependent protein binding IEP Predict GO terms from Neighborhoods
BP GO:0050768 negative regulation of neurogenesis IEP Predict GO terms from Neighborhoods
MF GO:0051059 NF-kappaB binding IEP Predict GO terms from Neighborhoods
BP GO:0051084 'de novo' post-translational protein folding IEP Predict GO terms from Neighborhoods
BP GO:0051085 chaperone cofactor-dependent protein refolding IEP Predict GO terms from Neighborhoods
MF GO:0051087 chaperone binding IEP Predict GO terms from Neighborhoods
BP GO:0051100 negative regulation of binding IEP Predict GO terms from Neighborhoods
BP GO:0051101 regulation of DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0051117 ATPase binding IEP Predict GO terms from Neighborhoods
BP GO:0051592 response to calcium ion IEP Predict GO terms from Neighborhoods
MF GO:0051787 misfolded protein binding IEP Predict GO terms from Neighborhoods
BP GO:0051896 regulation of protein kinase B signaling IEP Predict GO terms from Neighborhoods
BP GO:0051897 positive regulation of protein kinase B signaling IEP Predict GO terms from Neighborhoods
BP GO:0051961 negative regulation of nervous system development IEP Predict GO terms from Neighborhoods
BP GO:0060759 regulation of response to cytokine stimulus IEP Predict GO terms from Neighborhoods
BP GO:0060760 positive regulation of response to cytokine stimulus IEP Predict GO terms from Neighborhoods
BP GO:0061025 membrane fusion IEP Predict GO terms from Neighborhoods
BP GO:0061077 chaperone-mediated protein folding IEP Predict GO terms from Neighborhoods
BP GO:0070059 intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress IEP Predict GO terms from Neighborhoods
BP GO:0070848 response to growth factor IEP Predict GO terms from Neighborhoods
BP GO:0071248 cellular response to metal ion IEP Predict GO terms from Neighborhoods
BP GO:0071277 cellular response to calcium ion IEP Predict GO terms from Neighborhoods
BP GO:0071363 cellular response to growth factor stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071763 nuclear membrane organization IEP Predict GO terms from Neighborhoods
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
BP GO:0090174 organelle membrane fusion IEP Predict GO terms from Neighborhoods
BP GO:0090332 stomatal closure IEP Predict GO terms from Neighborhoods
BP GO:0097190 apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0097193 intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0101031 chaperone complex IEP Predict GO terms from Neighborhoods
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Predict GO terms from Neighborhoods
CC GO:0140535 intracellular protein-containing complex IEP Predict GO terms from Neighborhoods
MF GO:0140677 molecular function activator activity IEP Predict GO terms from Neighborhoods
BP GO:1903265 positive regulation of tumor necrosis factor-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1903859 regulation of dendrite extension IEP Predict GO terms from Neighborhoods
BP GO:1903861 positive regulation of dendrite extension IEP Predict GO terms from Neighborhoods
MF GO:1990782 protein tyrosine kinase binding IEP Predict GO terms from Neighborhoods
BP GO:2000060 positive regulation of ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR007239 Atg5 141 198
IPR007239 Atg5 235 448
IPR009091 RCC1/BLIP-II 684 958
IPR000408 Reg_chr_condens 841 889
IPR000408 Reg_chr_condens 907 951
No external refs found!