SOLTUB.AGRIA.G00000007832


Description : CW-type Zinc Finger


Gene families : OG_02_0008067 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000007832
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_59


Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA AHRD
BP GO:0002833 positive regulation of response to biotic stimulus IEA AHRD
MF GO:0003676 nucleic acid binding IEA AHRD
MF GO:0003824 catalytic activity IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005694 chromosome IEA AHRD
CC GO:0005737 cytoplasm IEA AHRD
BP GO:0006281 DNA repair IEA AHRD
BP GO:0006355 regulation of DNA-templated transcription IEA AHRD
BP GO:0007127 meiosis I IEA AHRD
BP GO:0007276 gamete generation IEA AHRD
BP GO:0010629 negative regulation of gene expression IEA AHRD
BP GO:0016310 phosphorylation IEA AHRD
BP GO:0031349 positive regulation of defense response IEA AHRD
BP GO:0032103 positive regulation of response to external stimulus IEA AHRD
BP GO:0032502 developmental process IEA AHRD
BP GO:0040029 epigenetic regulation of gene expression IEA AHRD
MF GO:0042393 histone binding IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
BP GO:0044030 regulation of DNA methylation IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
BP GO:0048522 positive regulation of cellular process IEA AHRD
BP GO:0048523 negative regulation of cellular process IEA AHRD
BP GO:0050778 positive regulation of immune response IEA AHRD
BP GO:1902275 regulation of chromatin organization IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000118 histone deacetylase complex IEP Predict GO terms from Neighborhoods
BP GO:0000414 regulation of histone H3-K36 methylation IEP Predict GO terms from Neighborhoods
CC GO:0000792 heterochromatin IEP Predict GO terms from Neighborhoods
MF GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0001221 transcription coregulator binding IEP Predict GO terms from Neighborhoods
MF GO:0001222 transcription corepressor binding IEP Predict GO terms from Neighborhoods
BP GO:0001702 gastrulation with mouth forming second IEP Predict GO terms from Neighborhoods
BP GO:0001817 regulation of cytokine production IEP Predict GO terms from Neighborhoods
BP GO:0001819 positive regulation of cytokine production IEP Predict GO terms from Neighborhoods
BP GO:0002009 morphogenesis of an epithelium IEP Predict GO terms from Neighborhoods
BP GO:0002250 adaptive immune response IEP Predict GO terms from Neighborhoods
BP GO:0002252 immune effector process IEP Predict GO terms from Neighborhoods
BP GO:0002443 leukocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002449 lymphocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002456 T cell mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002458 peripheral T cell tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains IEP Predict GO terms from Neighborhoods
BP GO:0002461 tolerance induction dependent upon immune response IEP Predict GO terms from Neighborhoods
BP GO:0002465 peripheral tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002507 tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002508 central tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002509 central tolerance induction to self antigen IEP Predict GO terms from Neighborhoods
BP GO:0002513 tolerance induction to self antigen IEP Predict GO terms from Neighborhoods
BP GO:0002517 T cell tolerance induction IEP Predict GO terms from Neighborhoods
BP GO:0002685 regulation of leukocyte migration IEP Predict GO terms from Neighborhoods
MF GO:0003714 transcription corepressor activity IEP Predict GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0005543 phospholipid binding IEP Predict GO terms from Neighborhoods
CC GO:0005667 transcription regulator complex IEP Predict GO terms from Neighborhoods
CC GO:0005700 polytene chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005765 lysosomal membrane IEP Predict GO terms from Neighborhoods
CC GO:0005769 early endosome IEP Predict GO terms from Neighborhoods
CC GO:0005798 Golgi-associated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0005813 centrosome IEP Predict GO terms from Neighborhoods
BP GO:0006473 protein acetylation IEP Predict GO terms from Neighborhoods
BP GO:0006475 internal protein amino acid acetylation IEP Predict GO terms from Neighborhoods
BP GO:0006605 protein targeting IEP Predict GO terms from Neighborhoods
BP GO:0006623 protein targeting to vacuole IEP Predict GO terms from Neighborhoods
BP GO:0006906 vesicle fusion IEP Predict GO terms from Neighborhoods
BP GO:0006914 autophagy IEP Predict GO terms from Neighborhoods
BP GO:0006959 humoral immune response IEP Predict GO terms from Neighborhoods
BP GO:0007034 vacuolar transport IEP Predict GO terms from Neighborhoods
BP GO:0007041 lysosomal transport IEP Predict GO terms from Neighborhoods
BP GO:0007063 regulation of sister chromatid cohesion IEP Predict GO terms from Neighborhoods
BP GO:0007369 gastrulation IEP Predict GO terms from Neighborhoods
MF GO:0008017 microtubule binding IEP Predict GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008276 protein methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0008285 negative regulation of cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0008333 endosome to lysosome transport IEP Predict GO terms from Neighborhoods
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0009606 tropism IEP Predict GO terms from Neighborhoods
BP GO:0009629 response to gravity IEP Predict GO terms from Neighborhoods
BP GO:0009630 gravitropism IEP Predict GO terms from Neighborhoods
CC GO:0010008 endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0010639 negative regulation of organelle organization IEP Predict GO terms from Neighborhoods
BP GO:0010948 negative regulation of cell cycle process IEP Predict GO terms from Neighborhoods
CC GO:0015630 microtubule cytoskeleton IEP Predict GO terms from Neighborhoods
MF GO:0015631 tubulin binding IEP Predict GO terms from Neighborhoods
BP GO:0016050 vesicle organization IEP Predict GO terms from Neighborhoods
BP GO:0016236 macroautophagy IEP Predict GO terms from Neighborhoods
MF GO:0016278 lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0016573 histone acetylation IEP Predict GO terms from Neighborhoods
CC GO:0016580 Sin3 complex IEP Predict GO terms from Neighborhoods
CC GO:0016581 NuRD complex IEP Predict GO terms from Neighborhoods
MF GO:0016922 nuclear receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0017015 regulation of transforming growth factor beta receptor signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0017053 transcription repressor complex IEP Predict GO terms from Neighborhoods
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predict GO terms from Neighborhoods
BP GO:0018394 peptidyl-lysine acetylation IEP Predict GO terms from Neighborhoods
BP GO:0021895 cerebral cortex neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0021953 central nervous system neuron differentiation IEP Predict GO terms from Neighborhoods
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predict GO terms from Neighborhoods
CC GO:0030123 AP-3 adaptor complex IEP Predict GO terms from Neighborhoods
CC GO:0030135 coated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0030136 clathrin-coated vesicle IEP Predict GO terms from Neighborhoods
BP GO:0030182 neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0030261 chromosome condensation IEP Predict GO terms from Neighborhoods
MF GO:0030331 nuclear estrogen receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0030334 regulation of cell migration IEP Predict GO terms from Neighborhoods
BP GO:0030336 negative regulation of cell migration IEP Predict GO terms from Neighborhoods
BP GO:0030510 regulation of BMP signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0030514 negative regulation of BMP signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0030897 HOPS complex IEP Predict GO terms from Neighborhoods
BP GO:0031056 regulation of histone modification IEP Predict GO terms from Neighborhoods
BP GO:0031060 regulation of histone methylation IEP Predict GO terms from Neighborhoods
MF GO:0031491 nucleosome binding IEP Predict GO terms from Neighborhoods
CC GO:0031902 late endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0032642 regulation of chemokine production IEP Predict GO terms from Neighborhoods
BP GO:0032722 positive regulation of chemokine production IEP Predict GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Predict GO terms from Neighborhoods
BP GO:0033044 regulation of chromosome organization IEP Predict GO terms from Neighborhoods
BP GO:0033135 regulation of peptidyl-serine phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0034058 endosomal vesicle fusion IEP Predict GO terms from Neighborhoods
CC GO:0034708 methyltransferase complex IEP Predict GO terms from Neighborhoods
MF GO:0035064 methylated histone binding IEP Predict GO terms from Neighborhoods
MF GO:0035091 phosphatidylinositol binding IEP Predict GO terms from Neighborhoods
CC GO:0035097 histone methyltransferase complex IEP Predict GO terms from Neighborhoods
BP GO:0040012 regulation of locomotion IEP Predict GO terms from Neighborhoods
BP GO:0040013 negative regulation of locomotion IEP Predict GO terms from Neighborhoods
MF GO:0042054 histone methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0042766 obsolete nucleosome mobilization IEP Predict GO terms from Neighborhoods
MF GO:0042799 histone methyltransferase activity (H4-K20 specific) IEP Predict GO terms from Neighborhoods
MF GO:0042826 histone deacetylase binding IEP Predict GO terms from Neighborhoods
MF GO:0042974 nuclear retinoic acid receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0043383 negative T cell selection IEP Predict GO terms from Neighborhoods
BP GO:0043543 protein acylation IEP Predict GO terms from Neighborhoods
BP GO:0043966 histone H3 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0043967 histone H4 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0045058 T cell selection IEP Predict GO terms from Neighborhoods
BP GO:0045060 negative thymic T cell selection IEP Predict GO terms from Neighborhoods
BP GO:0045061 thymic T cell selection IEP Predict GO terms from Neighborhoods
BP GO:0045786 negative regulation of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0045875 negative regulation of sister chromatid cohesion IEP Predict GO terms from Neighborhoods
MF GO:0046332 SMAD binding IEP Predict GO terms from Neighborhoods
MF GO:0046965 nuclear retinoid X receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0046966 nuclear thyroid hormone receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0046975 histone methyltransferase activity (H3-K36 specific) IEP Predict GO terms from Neighborhoods
BP GO:0048284 organelle fusion IEP Predict GO terms from Neighborhoods
BP GO:0048598 embryonic morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048729 tissue morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:0050681 nuclear androgen receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0051098 regulation of binding IEP Predict GO terms from Neighborhoods
BP GO:0051101 regulation of DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0061025 membrane fusion IEP Predict GO terms from Neighborhoods
MF GO:0061628 H3K27me3 modified histone binding IEP Predict GO terms from Neighborhoods
MF GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding IEP Predict GO terms from Neighborhoods
BP GO:0061919 process utilizing autophagic mechanism IEP Predict GO terms from Neighborhoods
MF GO:0070410 co-SMAD binding IEP Predict GO terms from Neighborhoods
MF GO:0070412 R-SMAD binding IEP Predict GO terms from Neighborhoods
MF GO:0070577 lysine-acetylated histone binding IEP Predict GO terms from Neighborhoods
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predict GO terms from Neighborhoods
CC GO:0070822 Sin3-type complex IEP Predict GO terms from Neighborhoods
BP GO:0071675 regulation of mononuclear cell migration IEP Predict GO terms from Neighborhoods
BP GO:0071922 regulation of cohesin loading IEP Predict GO terms from Neighborhoods
BP GO:0071923 negative regulation of cohesin loading IEP Predict GO terms from Neighborhoods
BP GO:0072665 protein localization to vacuole IEP Predict GO terms from Neighborhoods
BP GO:0072666 establishment of protein localization to vacuole IEP Predict GO terms from Neighborhoods
BP GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0090101 negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0090174 organelle membrane fusion IEP Predict GO terms from Neighborhoods
BP GO:0090287 regulation of cellular response to growth factor stimulus IEP Predict GO terms from Neighborhoods
BP GO:0090288 negative regulation of cellular response to growth factor stimulus IEP Predict GO terms from Neighborhoods
CC GO:0090545 CHD-type complex IEP Predict GO terms from Neighborhoods
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Predict GO terms from Neighborhoods
BP GO:0097536 thymus epithelium morphogenesis IEP Predict GO terms from Neighborhoods
CC GO:0098852 lytic vacuole membrane IEP Predict GO terms from Neighborhoods
CC GO:0099023 vesicle tethering complex IEP Predict GO terms from Neighborhoods
BP GO:0120186 negative regulation of protein localization to chromatin IEP Predict GO terms from Neighborhoods
MF GO:0140030 modification-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140033 acetylation-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140034 methylation-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140297 DNA-binding transcription factor binding IEP Predict GO terms from Neighborhoods
BP GO:1901796 regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1901798 positive regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1903025 regulation of RNA polymerase II regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
BP GO:1903828 negative regulation of protein localization IEP Predict GO terms from Neighborhoods
BP GO:1903844 regulation of cellular response to transforming growth factor beta stimulus IEP Predict GO terms from Neighborhoods
CC GO:1904949 ATPase complex IEP Predict GO terms from Neighborhoods
BP GO:1905634 regulation of protein localization to chromatin IEP Predict GO terms from Neighborhoods
BP GO:2000145 regulation of cell motility IEP Predict GO terms from Neighborhoods
BP GO:2000146 negative regulation of cell motility IEP Predict GO terms from Neighborhoods
BP GO:2000401 regulation of lymphocyte migration IEP Predict GO terms from Neighborhoods
BP GO:2000404 regulation of T cell migration IEP Predict GO terms from Neighborhoods
BP GO:2000410 regulation of thymocyte migration IEP Predict GO terms from Neighborhoods
BP GO:2000677 regulation of transcription regulatory region DNA binding IEP Predict GO terms from Neighborhoods
BP GO:2001251 negative regulation of chromosome organization IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR041006 Morc_S5 459 599
IPR036890 HATPase_C_sf 225 411
IPR011124 Znf_CW 621 663
No external refs found!