Description : E3 ubiquitin-protein ligase sina
Gene families : OG_02_0025746 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000009577 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_254 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000003 | reproduction | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000126 | transcription factor TFIIIB complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000182 | rDNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000469 | cleavage involved in rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000478 | endonucleolytic cleavage involved in rRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000479 | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000979 | RNA polymerase II core promoter sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000992 | RNA polymerase III cis-regulatory region sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000993 | RNA polymerase II complex binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001006 | RNA polymerase III type 3 promoter sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001016 | RNA polymerase III transcription regulatory region sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001046 | core promoter sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001098 | basal transcription machinery binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001099 | basal RNA polymerase II transcription machinery binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001173 | DNA-templated transcriptional start site selection | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001174 | transcriptional start site selection at RNA polymerase II promoter | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005667 | transcription regulator complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006384 | transcription initiation at RNA polymerase III promoter | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008276 | protein methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009527 | plastid outer membrane | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009707 | chloroplast outer membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016251 | RNA polymerase II general transcription initiation factor activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016273 | arginine N-methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016274 | protein-arginine N-methyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016567 | protein ubiquitination | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016592 | mediator complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016604 | nuclear body | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016922 | nuclear receptor binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0017025 | TBP-class protein binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018195 | peptidyl-arginine modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018216 | peptidyl-arginine methylation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0019005 | SCF ubiquitin ligase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019083 | viral transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030490 | maturation of SSU-rRNA | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0032991 | protein-containing complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0035061 | interchromatin granule | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0035241 | protein-arginine omega-N monomethyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035246 | peptidyl-arginine N-methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035247 | peptidyl-arginine omega-N-methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0036211 | protein modification process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043175 | RNA polymerase core enzyme binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043388 | positive regulation of DNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046966 | nuclear thyroid hormone receptor binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051099 | positive regulation of binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051101 | regulation of DNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051123 | RNA polymerase II preinitiation complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | protein-DNA complex assembly | IEP | Predict GO terms from Neighborhoods | |
| MF | GO:0070063 | RNA polymerase binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070897 | transcription preinitiation complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090502 | RNA phosphodiester bond hydrolysis, endonucleolytic | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0090576 | RNA polymerase III transcription regulator complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0097550 | transcription preinitiation complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0098781 | ncRNA transcription | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140223 | general transcription initiation factor activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140296 | general transcription initiation factor binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904796 | regulation of core promoter binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904798 | positive regulation of core promoter binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1990114 | RNA polymerase II core complex assembly | IEP | Predict GO terms from Neighborhoods |
| CC | GO:1990234 | transferase complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:1990841 | promoter-specific chromatin binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000677 | regulation of transcription regulatory region DNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000679 | positive regulation of transcription regulatory region DNA binding | IEP | Predict GO terms from Neighborhoods |
| No external refs found! |