Coexpression cluster: Cluster_225 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0046445 benzyl isoquinoline alkaloid metabolic process 5.41% (4/74) 5.88 1e-06 0.000221
GO:0009708 benzyl isoquinoline alkaloid biosynthetic process 5.41% (4/74) 6.0 0.0 0.000232
GO:1901010 (S)-reticuline metabolic process 5.41% (4/74) 5.92 1e-06 0.000237
GO:1901012 (S)-reticuline biosynthetic process 5.41% (4/74) 6.04 0.0 0.000272
GO:0003997 acyl-CoA oxidase activity 4.05% (3/74) 7.17 1e-06 0.000303
GO:0044255 cellular lipid metabolic process 24.32% (18/74) 1.98 0.0 0.000393
GO:0006066 alcohol metabolic process 10.81% (8/74) 3.24 2e-06 0.000525
GO:0006629 lipid metabolic process 27.03% (20/74) 1.84 0.0 0.000706
GO:0042221 response to chemical 48.65% (36/74) 1.0 5e-06 0.001045
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 6.76% (5/74) 4.36 5e-06 0.001078
GO:0008610 lipid biosynthetic process 18.92% (14/74) 2.02 7e-06 0.001226
GO:1903175 fatty alcohol biosynthetic process 4.05% (3/74) 6.31 7e-06 0.001316
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 6.76% (5/74) 4.14 1e-05 0.001444
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity 4.05% (3/74) 6.17 1e-05 0.001501
GO:1903173 fatty alcohol metabolic process 4.05% (3/74) 5.93 1.6e-05 0.002184
GO:0010197 polar nucleus fusion 5.41% (4/74) 4.69 1.9e-05 0.002309
GO:0030794 (S)-coclaurine-N-methyltransferase activity 2.7% (2/74) 8.04 2.1e-05 0.002485
GO:0000741 karyogamy 5.41% (4/74) 4.59 2.4e-05 0.002713
GO:0050896 response to stimulus 62.16% (46/74) 0.68 3.8e-05 0.003996
GO:0009266 response to temperature stimulus 20.27% (15/74) 1.65 6.4e-05 0.006337
GO:0045017 glycerolipid biosynthetic process 6.76% (5/74) 3.55 7e-05 0.006699
GO:0033075 isoquinoline alkaloid biosynthetic process 5.41% (4/74) 4.15 8e-05 0.007231
GO:0043231 intracellular membrane-bounded organelle 56.76% (42/74) 0.7 9.9e-05 0.00731
GO:0046486 glycerolipid metabolic process 8.11% (6/74) 3.06 8.5e-05 0.007368
GO:0033076 isoquinoline alkaloid metabolic process 5.41% (4/74) 4.1 9.1e-05 0.007535
GO:0110165 cellular anatomical entity 81.08% (60/74) 0.43 9.9e-05 0.007583
GO:0016491 oxidoreductase activity 20.27% (15/74) 1.6 9.8e-05 0.007823
GO:0006650 glycerophospholipid metabolic process 6.76% (5/74) 3.4 0.000116 0.007956
GO:0006796 phosphate-containing compound metabolic process 22.97% (17/74) 1.45 0.000115 0.008184
GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase 2.7% (2/74) 6.88 0.000126 0.008396
GO:0043227 membrane-bounded organelle 56.76% (42/74) 0.69 0.000131 0.008461
GO:0006793 phosphorus metabolic process 22.97% (17/74) 1.42 0.000141 0.008553
GO:0003824 catalytic activity 54.05% (40/74) 0.71 0.000152 0.008642
GO:0008289 lipid binding 9.46% (7/74) 2.6 0.00016 0.008648
GO:0009628 response to abiotic stimulus 37.84% (28/74) 0.98 0.000139 0.00869
GO:0043878 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity 2.7% (2/74) 6.72 0.000158 0.008735
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 4.05% (3/74) 4.88 0.000151 0.008848
GO:0005575 cellular_component 81.08% (60/74) 0.41 0.000174 0.00912
GO:0080127 fruit septum development 2.7% (2/74) 6.59 0.000192 0.009843
GO:0016021 integral component of membrane 21.62% (16/74) 1.43 0.000214 0.010672
GO:0009636 response to toxic substance 6.76% (5/74) 3.18 0.000234 0.011118
GO:0008150 biological_process 81.08% (60/74) 0.4 0.00024 0.011143
GO:0030902 hindbrain development 2.7% (2/74) 6.46 0.000231 0.011222
GO:0080191 secondary thickening 2.7% (2/74) 6.34 0.000272 0.011806
GO:0051791 medium-chain fatty acid metabolic process 2.7% (2/74) 6.34 0.000272 0.011806
GO:0006635 fatty acid beta-oxidation 4.05% (3/74) 4.61 0.000261 0.011862
GO:0009635 response to herbicide 4.05% (3/74) 4.54 0.000299 0.012689
GO:0080168 abscisic acid transport 4.05% (3/74) 4.5 0.000325 0.012993
GO:0006644 phospholipid metabolic process 8.11% (6/74) 2.71 0.000321 0.013089
GO:0006950 response to stress 47.3% (35/74) 0.76 0.000318 0.013227
GO:1901615 organic hydroxy compound metabolic process 12.16% (9/74) 2.03 0.000341 0.013361
GO:0044238 primary metabolic process 51.35% (38/74) 0.69 0.000387 0.014863
GO:0044242 cellular lipid catabolic process 6.76% (5/74) 2.96 0.000477 0.017615
GO:0006997 nucleus organization 5.41% (4/74) 3.48 0.000468 0.017616
GO:0009821 alkaloid biosynthetic process 6.76% (5/74) 2.94 0.000496 0.017996
GO:0090395 plant cell papilla 2.7% (2/74) 5.88 0.00053 0.018255
GO:1905328 plant septum development 2.7% (2/74) 5.88 0.00053 0.018255
GO:0009987 cellular process 71.62% (53/74) 0.46 0.000515 0.018365
GO:0019637 organophosphate metabolic process 12.16% (9/74) 1.93 0.000568 0.019231
GO:0010193 response to ozone 5.41% (4/74) 3.38 0.000612 0.020013
GO:0046165 alcohol biosynthetic process 5.41% (4/74) 3.38 0.000612 0.020013
GO:0070505 pollen coat 2.7% (2/74) 5.72 0.000657 0.021155
GO:0044281 small molecule metabolic process 22.97% (17/74) 1.23 0.000669 0.021186
GO:0048284 organelle fusion 5.41% (4/74) 3.32 0.000707 0.021369
GO:0009062 fatty acid catabolic process 4.05% (3/74) 4.12 0.000702 0.021558
GO:0006081 cellular aldehyde metabolic process 5.41% (4/74) 3.33 0.000694 0.02165
GO:1901568 fatty acid derivative metabolic process 5.41% (4/74) 3.31 0.000732 0.021804
GO:0006721 terpenoid metabolic process 9.46% (7/74) 2.22 0.00078 0.022251
GO:0046864 isoprenoid transport 4.05% (3/74) 4.08 0.000771 0.022317
GO:0046865 terpenoid transport 4.05% (3/74) 4.08 0.000771 0.022317
GO:0010208 pollen wall assembly 5.41% (4/74) 3.27 0.000812 0.022816
GO:0019395 fatty acid oxidation 4.05% (3/74) 4.0 0.000897 0.024857
GO:0016114 terpenoid biosynthetic process 8.11% (6/74) 2.42 0.000928 0.025371
GO:0010033 response to organic substance 33.78% (25/74) 0.89 0.000967 0.025396
GO:0015850 organic hydroxy compound transport 5.41% (4/74) 3.21 0.000958 0.025489
GO:0031224 intrinsic component of membrane 21.62% (16/74) 1.24 0.000951 0.025655
GO:0008152 metabolic process 58.11% (43/74) 0.55 0.00105 0.026522
GO:0006970 response to osmotic stress 16.22% (12/74) 1.49 0.001039 0.026588
GO:0045664 regulation of neuron differentiation 4.05% (3/74) 3.93 0.001034 0.026804
GO:0043229 intracellular organelle 58.11% (43/74) 0.54 0.00119 0.029685
GO:0019751 polyol metabolic process 4.05% (3/74) 3.84 0.001248 0.030744
GO:0004029 aldehyde dehydrogenase (NAD+) activity 2.7% (2/74) 5.24 0.001295 0.031132
GO:0050593 N-methylcoclaurine 3'-monooxygenase activity 2.7% (2/74) 5.24 0.001295 0.031132
GO:0003674 molecular_function 77.03% (57/74) 0.37 0.001322 0.03142
GO:0043226 organelle 58.11% (43/74) 0.53 0.001361 0.031582
GO:0009738 abscisic acid-activated signaling pathway 6.76% (5/74) 2.62 0.001361 0.031949
GO:0034440 lipid oxidation 4.05% (3/74) 3.75 0.001487 0.032265
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 5.41% (4/74) 3.05 0.001423 0.032277
GO:0009409 response to cold 13.51% (10/74) 1.62 0.001445 0.032399
GO:0016102 diterpenoid biosynthetic process 5.41% (4/74) 3.04 0.001464 0.032475
GO:0022804 active transmembrane transporter activity 9.46% (7/74) 2.07 0.00142 0.032576
GO:1901656 glycoside transport 2.7% (2/74) 5.14 0.001486 0.032597
GO:0005504 fatty acid binding 2.7% (2/74) 4.96 0.001907 0.032817
GO:0005839 proteasome core complex 1.35% (1/74) 9.04 0.001893 0.032859
GO:0102701 tricyclene synthase activity 1.35% (1/74) 9.04 0.001893 0.032859
GO:0050057 linamarin synthase activity 1.35% (1/74) 9.04 0.001893 0.032859
GO:0004370 glycerol kinase activity 1.35% (1/74) 9.04 0.001893 0.032859
GO:0046167 glycerol-3-phosphate biosynthetic process 1.35% (1/74) 9.04 0.001893 0.032859
GO:0106158 glycero-3-phosphocholine acyltransferase activity 1.35% (1/74) 9.04 0.001893 0.032859
GO:0009976 tocopherol cyclase activity 1.35% (1/74) 9.04 0.001893 0.032859
GO:0052604 delta-tocopherol cyclase activity 1.35% (1/74) 9.04 0.001893 0.032859
GO:0052605 gamma-tocopherol cyclase activity 1.35% (1/74) 9.04 0.001893 0.032859
GO:0002054 nucleobase binding 1.35% (1/74) 9.04 0.001893 0.032859
GO:0002058 uracil binding 1.35% (1/74) 9.04 0.001893 0.032859
GO:0002059 thymine binding 1.35% (1/74) 9.04 0.001893 0.032859
GO:0002061 pyrimidine nucleobase binding 1.35% (1/74) 9.04 0.001893 0.032859
GO:0004157 dihydropyrimidinase activity 1.35% (1/74) 9.04 0.001893 0.032859
GO:0014048 regulation of glutamate secretion 1.35% (1/74) 9.04 0.001893 0.032859
GO:0014049 positive regulation of glutamate secretion 1.35% (1/74) 9.04 0.001893 0.032859
GO:0031005 filamin binding 1.35% (1/74) 9.04 0.001893 0.032859
GO:0051764 actin crosslink formation 1.35% (1/74) 9.04 0.001893 0.032859
GO:0051957 positive regulation of amino acid transport 1.35% (1/74) 9.04 0.001893 0.032859
GO:0006071 glycerol metabolic process 2.7% (2/74) 4.92 0.00202 0.034174
GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity 2.7% (2/74) 4.92 0.00202 0.034174
GO:0071704 organic substance metabolic process 54.05% (40/74) 0.55 0.002071 0.034734
GO:0015692 lead ion transport 2.7% (2/74) 4.88 0.002137 0.035538
GO:0060429 epithelium development 4.05% (3/74) 3.69 0.001675 0.035943
GO:0010496 intercellular transport 4.05% (3/74) 3.68 0.001714 0.03601
GO:0098739 import across plasma membrane 5.41% (4/74) 2.98 0.001706 0.036234
GO:0016042 lipid catabolic process 6.76% (5/74) 2.46 0.002198 0.036256
GO:0001568 blood vessel development 2.7% (2/74) 4.84 0.002256 0.036908
GO:0002238 response to molecule of fungal origin 6.76% (5/74) 2.45 0.002278 0.036969
GO:0019400 alditol metabolic process 2.7% (2/74) 4.8 0.002378 0.038283
GO:0042593 glucose homeostasis 4.05% (3/74) 3.63 0.001876 0.039015
GO:1901570 fatty acid derivative biosynthetic process 4.05% (3/74) 3.49 0.00247 0.039441
GO:0010927 cellular component assembly involved in morphogenesis 5.41% (4/74) 2.81 0.002598 0.040826
GO:0009651 response to salt stress 13.51% (10/74) 1.51 0.002586 0.040966
GO:0006810 transport 22.97% (17/74) 1.05 0.002633 0.041051
GO:0098657 import into cell 5.41% (4/74) 2.8 0.002692 0.04165
GO:1901564 organonitrogen compound metabolic process 36.49% (27/74) 0.74 0.00274 0.042076
GO:0140359 ABC-type transporter activity 4.05% (3/74) 3.43 0.002779 0.042339
GO:0003365 establishment of cell polarity involved in ameboidal cell migration 1.35% (1/74) 8.04 0.003783 0.044414
GO:0070650 actin filament bundle distribution 1.35% (1/74) 8.04 0.003783 0.044414
GO:0097230 cell motility in response to potassium ion 1.35% (1/74) 8.04 0.003783 0.044414
GO:0006648 dihydrosphingosine-1-P pathway 1.35% (1/74) 8.04 0.003783 0.044414
GO:0006668 sphinganine-1-phosphate metabolic process 1.35% (1/74) 8.04 0.003783 0.044414
GO:0006669 sphinganine-1-phosphate biosynthetic process 1.35% (1/74) 8.04 0.003783 0.044414
GO:0008481 sphinganine kinase activity 1.35% (1/74) 8.04 0.003783 0.044414
GO:0032656 regulation of interleukin-13 production 1.35% (1/74) 8.04 0.003783 0.044414
GO:0032736 positive regulation of interleukin-13 production 1.35% (1/74) 8.04 0.003783 0.044414
GO:0038036 sphingosine-1-phosphate receptor activity 1.35% (1/74) 8.04 0.003783 0.044414
GO:0043977 histone H2A-K5 acetylation 1.35% (1/74) 8.04 0.003783 0.044414
GO:0043980 histone H2B-K12 acetylation 1.35% (1/74) 8.04 0.003783 0.044414
GO:0045125 bioactive lipid receptor activity 1.35% (1/74) 8.04 0.003783 0.044414
GO:0090037 positive regulation of protein kinase C signaling 1.35% (1/74) 8.04 0.003783 0.044414
GO:0090154 positive regulation of sphingolipid biosynthetic process 1.35% (1/74) 8.04 0.003783 0.044414
GO:0090280 positive regulation of calcium ion import 1.35% (1/74) 8.04 0.003783 0.044414
GO:2000304 positive regulation of ceramide biosynthetic process 1.35% (1/74) 8.04 0.003783 0.044414
GO:0006210 thymine catabolic process 1.35% (1/74) 8.04 0.003783 0.044414
GO:0006249 dCMP catabolic process 1.35% (1/74) 8.04 0.003783 0.044414
GO:0019859 thymine metabolic process 1.35% (1/74) 8.04 0.003783 0.044414
GO:0046050 UMP catabolic process 1.35% (1/74) 8.04 0.003783 0.044414
GO:0046063 dCMP metabolic process 1.35% (1/74) 8.04 0.003783 0.044414
GO:0046079 dUMP catabolic process 1.35% (1/74) 8.04 0.003783 0.044414
GO:0051954 positive regulation of amine transport 1.35% (1/74) 8.04 0.003783 0.044414
GO:0036094 small molecule binding 22.97% (17/74) 1.03 0.002942 0.044483
GO:1901617 organic hydroxy compound biosynthetic process 6.76% (5/74) 2.27 0.003872 0.045192
GO:0033500 carbohydrate homeostasis 4.05% (3/74) 3.38 0.003054 0.045826
GO:0009058 biosynthetic process 28.38% (21/74) 0.86 0.003969 0.046056
GO:0001216 DNA-binding transcription activator activity 4.05% (3/74) 3.24 0.004043 0.046642
GO:0009954 proximal/distal pattern formation 2.7% (2/74) 4.4 0.004084 0.046848
GO:0071214 cellular response to abiotic stimulus 9.46% (7/74) 1.84 0.003362 0.04692
GO:0104004 cellular response to environmental stimulus 9.46% (7/74) 1.84 0.003362 0.04692
GO:0050660 flavin adenine dinucleotide binding 4.05% (3/74) 3.33 0.003405 0.047191
GO:0006775 fat-soluble vitamin metabolic process 2.7% (2/74) 4.59 0.003177 0.047323
GO:0046474 glycerophospholipid biosynthetic process 4.05% (3/74) 3.35 0.003226 0.047348
GO:0010584 pollen exine formation 4.05% (3/74) 3.35 0.003226 0.047348
GO:0043168 anion binding 18.92% (14/74) 1.16 0.003345 0.047355
GO:0016101 diterpenoid metabolic process 5.41% (4/74) 2.62 0.00418 0.04741
GO:0051234 establishment of localization 22.97% (17/74) 0.99 0.00417 0.047567
GO:0015562 efflux transmembrane transporter activity 4.05% (3/74) 3.34 0.003344 0.047681
GO:0015718 monocarboxylic acid transport 4.05% (3/74) 3.34 0.003344 0.047681
GO:0055085 transmembrane transport 12.16% (9/74) 1.56 0.003319 0.048006
GO:0051179 localization 25.68% (19/74) 0.94 0.003301 0.04809
GO:0016098 monoterpenoid metabolic process 4.05% (3/74) 3.2 0.004387 0.049194
GO:0016099 monoterpenoid biosynthetic process 4.05% (3/74) 3.2 0.004387 0.049194
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_266 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_8 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_23 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_38 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_40 0.018 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_77 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_90 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_114 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_136 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_143 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_149 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_151 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_158 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_182 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_224 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (74) (download table)

InterPro Domains

GO Terms

Family Terms