Coexpression cluster: Cluster_209 (HCCA Clusters (HRR 50 & PCC 0.5))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0098796 membrane protein complex 25.0% (12/48) 3.68 0.0 0.0
GO:1902495 transmembrane transporter complex 14.58% (7/48) 5.67 0.0 0.0
GO:0098803 respiratory chain complex 14.58% (7/48) 5.89 0.0 0.0
GO:0019646 aerobic electron transport chain 12.5% (6/48) 6.42 0.0 0.0
GO:0009060 aerobic respiration 14.58% (7/48) 5.47 0.0 0.0
GO:0098798 mitochondrial protein-containing complex 16.67% (8/48) 4.75 0.0 0.0
GO:1990351 transporter complex 14.58% (7/48) 5.29 0.0 0.0
GO:0045333 cellular respiration 14.58% (7/48) 5.3 0.0 0.0
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c 8.33% (4/48) 8.08 0.0 0.0
GO:0098800 inner mitochondrial membrane protein complex 14.58% (7/48) 5.18 0.0 0.0
GO:1990204 oxidoreductase complex 14.58% (7/48) 5.06 0.0 0.0
GO:0022904 respiratory electron transport chain 12.5% (6/48) 5.7 0.0 0.0
GO:0032991 protein-containing complex 47.92% (23/48) 1.95 0.0 0.0
GO:0005750 mitochondrial respiratory chain complex III 8.33% (4/48) 7.76 0.0 0.0
GO:0045275 respiratory chain complex III 8.33% (4/48) 7.76 0.0 0.0
GO:0015980 energy derivation by oxidation of organic compounds 14.58% (7/48) 4.91 0.0 0.0
GO:1902494 catalytic complex 29.17% (14/48) 2.58 0.0 3e-06
GO:0070069 cytochrome complex 8.33% (4/48) 6.76 0.0 4e-06
GO:0022900 electron transport chain 12.5% (6/48) 4.34 1e-06 3.9e-05
GO:0007630 jump response 4.17% (2/48) 9.67 1e-06 0.000104
GO:0006091 generation of precursor metabolites and energy 14.58% (7/48) 3.35 5e-06 0.00033
GO:0051092 positive regulation of NF-kappaB transcription factor activity 6.25% (3/48) 6.5 5e-06 0.000333
GO:0007412 axon target recognition 4.17% (2/48) 8.67 9e-06 0.00046
GO:0007625 grooming behavior 4.17% (2/48) 8.67 9e-06 0.00046
GO:0007629 flight behavior 4.17% (2/48) 8.67 9e-06 0.00046
GO:0008594 photoreceptor cell morphogenesis 4.17% (2/48) 8.67 9e-06 0.00046
GO:0120113 cytoplasm to vacuole transport by the NVT pathway 4.17% (2/48) 8.67 9e-06 0.00046
GO:0031372 UBC13-MMS2 complex 4.17% (2/48) 8.35 1.5e-05 0.000668
GO:0035370 UBC13-UEV1A complex 4.17% (2/48) 8.35 1.5e-05 0.000668
GO:0060074 synapse maturation 4.17% (2/48) 8.35 1.5e-05 0.000668
GO:0072347 response to anesthetic 4.17% (2/48) 8.35 1.5e-05 0.000668
GO:0032981 mitochondrial respiratory chain complex I assembly 6.25% (3/48) 5.86 1.9e-05 0.000847
GO:0061057 peptidoglycan recognition protein signaling pathway 4.17% (2/48) 8.08 2.2e-05 0.00094
GO:0044395 protein targeting to vacuolar membrane 4.17% (2/48) 7.86 3.1e-05 0.001173
GO:1903265 positive regulation of tumor necrosis factor-mediated signaling pathway 4.17% (2/48) 7.86 3.1e-05 0.001173
GO:1903778 protein localization to vacuolar membrane 4.17% (2/48) 7.86 3.1e-05 0.001173
GO:0010257 NADH dehydrogenase complex assembly 6.25% (3/48) 5.67 2.9e-05 0.001195
GO:0061631 ubiquitin conjugating enzyme activity 6.25% (3/48) 5.61 3.3e-05 0.001209
GO:0005747 mitochondrial respiratory chain complex I 6.25% (3/48) 5.37 5.4e-05 0.001801
GO:0030964 NADH dehydrogenase complex 6.25% (3/48) 5.37 5.4e-05 0.001801
GO:0045271 respiratory chain complex I 6.25% (3/48) 5.37 5.4e-05 0.001801
GO:0001961 positive regulation of cytokine-mediated signaling pathway 4.17% (2/48) 7.5 5.3e-05 0.001905
GO:0045977 positive regulation of mitotic cell cycle, embryonic 4.17% (2/48) 7.35 6.6e-05 0.002017
GO:0050852 T cell receptor signaling pathway 4.17% (2/48) 7.35 6.6e-05 0.002017
GO:0051124 synaptic assembly at neuromuscular junction 4.17% (2/48) 7.35 6.6e-05 0.002017
GO:0061650 ubiquitin-like protein conjugating enzyme activity 6.25% (3/48) 5.3 6.2e-05 0.002041
GO:0010803 regulation of tumor necrosis factor-mediated signaling pathway 4.17% (2/48) 7.21 8.1e-05 0.00236
GO:0010994 free ubiquitin chain polymerization 4.17% (2/48) 7.21 8.1e-05 0.00236
GO:0033108 mitochondrial respiratory chain complex assembly 6.25% (3/48) 5.06 0.000102 0.002918
GO:0048667 cell morphogenesis involved in neuron differentiation 4.17% (2/48) 6.97 0.000114 0.003209
GO:0009794 regulation of mitotic cell cycle, embryonic 4.17% (2/48) 6.86 0.000133 0.003463
GO:0050851 antigen receptor-mediated signaling pathway 4.17% (2/48) 6.86 0.000133 0.003463
GO:0060760 positive regulation of response to cytokine stimulus 4.17% (2/48) 6.86 0.000133 0.003463
GO:0031396 regulation of protein ubiquitination 8.33% (4/48) 3.96 0.000129 0.00354
GO:0007528 neuromuscular junction development 4.17% (2/48) 6.58 0.000198 0.00507
GO:0034045 phagophore assembly site membrane 4.17% (2/48) 6.5 0.000223 0.005499
GO:1902914 regulation of protein polyubiquitination 4.17% (2/48) 6.5 0.000223 0.005499
GO:0065003 protein-containing complex assembly 16.67% (8/48) 2.26 0.000231 0.0056
GO:0000151 ubiquitin ligase complex 10.42% (5/48) 3.16 0.000239 0.005608
GO:1903320 regulation of protein modification by small protein conjugation or removal 8.33% (4/48) 3.73 0.000236 0.005619
GO:0044877 protein-containing complex binding 14.58% (7/48) 2.46 0.000258 0.005952
GO:0031371 ubiquitin conjugating enzyme complex 4.17% (2/48) 6.35 0.000277 0.006073
GO:0033182 regulation of histone ubiquitination 4.17% (2/48) 6.35 0.000277 0.006073
GO:0046330 positive regulation of JNK cascade 4.17% (2/48) 6.35 0.000277 0.006073
GO:0051247 positive regulation of protein metabolic process 14.58% (7/48) 2.43 0.000295 0.006379
GO:0032872 regulation of stress-activated MAPK cascade 6.25% (3/48) 4.43 0.00037 0.007878
GO:0051091 positive regulation of DNA-binding transcription factor activity 6.25% (3/48) 4.41 0.00039 0.00817
GO:0007416 synapse assembly 4.17% (2/48) 6.08 0.000401 0.008276
GO:0031398 positive regulation of protein ubiquitination 6.25% (3/48) 4.37 0.00042 0.008554
GO:0034605 cellular response to heat 8.33% (4/48) 3.49 0.000441 0.008602
GO:0071218 cellular response to misfolded protein 4.17% (2/48) 6.03 0.000435 0.008609
GO:0070914 UV-damage excision repair 4.17% (2/48) 6.03 0.000435 0.008609
GO:0070302 regulation of stress-activated protein kinase signaling cascade 6.25% (3/48) 4.31 0.000474 0.009004
GO:0002429 immune response-activating cell surface receptor signaling pathway 4.17% (2/48) 5.97 0.000471 0.009064
GO:0000729 DNA double-strand break processing 4.17% (2/48) 5.91 0.000508 0.009395
GO:0005774 vacuolar membrane 18.75% (9/48) 1.92 0.000504 0.009445
GO:1903532 positive regulation of secretion by cell 6.25% (3/48) 4.25 0.000533 0.009719
GO:0051047 positive regulation of secretion 6.25% (3/48) 4.23 0.000557 0.010038
GO:0051443 positive regulation of ubiquitin-protein transferase activity 4.17% (2/48) 5.81 0.000587 0.010181
GO:0043933 protein-containing complex organization 16.67% (8/48) 2.06 0.000584 0.010264
GO:0006623 protein targeting to vacuole 6.25% (3/48) 4.21 0.000583 0.010361
GO:0002768 immune response-regulating cell surface receptor signaling pathway 4.17% (2/48) 5.76 0.000628 0.010767
GO:0051788 response to misfolded protein 4.17% (2/48) 5.72 0.000671 0.011362
GO:2000008 regulation of protein localization to cell surface 4.17% (2/48) 5.67 0.000715 0.011965
GO:0022607 cellular component assembly 20.83% (10/48) 1.72 0.00073 0.012059
GO:0031401 positive regulation of protein modification process 10.42% (5/48) 2.8 0.000743 0.012143
GO:1903322 positive regulation of protein modification by small protein conjugation or removal 6.25% (3/48) 4.05 0.000796 0.012858
GO:0031624 ubiquitin conjugating enzyme binding 4.17% (2/48) 5.58 0.000808 0.012898
GO:0034330 cell junction organization 6.25% (3/48) 3.99 0.000911 0.014378
GO:0072666 establishment of protein localization to vacuole 6.25% (3/48) 3.95 0.000981 0.01531
GO:0001959 regulation of cytokine-mediated signaling pathway 4.17% (2/48) 5.38 0.001063 0.016058
GO:0008344 adult locomotory behavior 4.17% (2/48) 5.38 0.001063 0.016058
GO:0070628 proteasome binding 4.17% (2/48) 5.38 0.001063 0.016058
GO:0070449 elongin complex 2.08% (1/48) 9.67 0.001228 0.018161
GO:0030629 U6 snRNA 3'-end binding 2.08% (1/48) 9.67 0.001228 0.018161
GO:0072665 protein localization to vacuole 6.25% (3/48) 3.81 0.001294 0.018942
GO:0003925 G protein activity 4.17% (2/48) 5.18 0.001413 0.020264
GO:0060759 regulation of response to cytokine stimulus 4.17% (2/48) 5.18 0.001413 0.020264
GO:0043410 positive regulation of MAPK cascade 6.25% (3/48) 3.72 0.001543 0.021892
GO:0006301 postreplication repair 4.17% (2/48) 5.0 0.001812 0.025455
GO:0031625 ubiquitin protein ligase binding 8.33% (4/48) 2.9 0.002 0.027815
GO:0019941 modification-dependent protein catabolic process 10.42% (5/48) 2.46 0.002109 0.028225
GO:0006511 ubiquitin-dependent protein catabolic process 10.42% (5/48) 2.47 0.00206 0.028381
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling 4.17% (2/48) 4.89 0.002104 0.028419
GO:0044390 ubiquitin-like protein conjugating enzyme binding 4.17% (2/48) 4.89 0.002104 0.028419
GO:0031090 organelle membrane 29.17% (14/48) 1.18 0.00218 0.028631
GO:0032874 positive regulation of stress-activated MAPK cascade 4.17% (2/48) 4.86 0.00218 0.028893
GO:0072594 establishment of protein localization to organelle 8.33% (4/48) 2.86 0.00226 0.029138
GO:0045739 positive regulation of DNA repair 4.17% (2/48) 4.84 0.002257 0.029366
GO:0044389 ubiquitin-like protein ligase binding 8.33% (4/48) 2.84 0.002352 0.030047
GO:0043632 modification-dependent macromolecule catabolic process 10.42% (5/48) 2.41 0.002462 0.030617
GO:0050714 positive regulation of protein secretion 4.17% (2/48) 4.76 0.002498 0.030781
GO:0061944 negative regulation of protein K48-linked ubiquitination 2.08% (1/48) 8.67 0.002455 0.030791
GO:1904399 heparan sulfate binding 2.08% (1/48) 8.67 0.002455 0.030791
GO:0034329 cell junction assembly 4.17% (2/48) 4.74 0.00258 0.031523
GO:0051438 regulation of ubiquitin-protein transferase activity 4.17% (2/48) 4.72 0.002664 0.032268
GO:0048524 positive regulation of viral process 4.17% (2/48) 4.69 0.002749 0.033015
GO:0016043 cellular component organization 33.33% (16/48) 1.03 0.002949 0.033685
GO:1903530 regulation of secretion by cell 6.25% (3/48) 3.4 0.002932 0.033764
GO:0030534 adult behavior 4.17% (2/48) 4.67 0.002836 0.033765
GO:0046328 regulation of JNK cascade 4.17% (2/48) 4.65 0.002924 0.033947
GO:0070304 positive regulation of stress-activated protein kinase signaling cascade 4.17% (2/48) 4.65 0.002924 0.033947
GO:0051090 regulation of DNA-binding transcription factor activity 6.25% (3/48) 3.4 0.002896 0.034197
GO:2001022 positive regulation of response to DNA damage stimulus 4.17% (2/48) 4.58 0.003194 0.035904
GO:0051046 regulation of secretion 6.25% (3/48) 3.28 0.003697 0.036075
GO:0051347 positive regulation of transferase activity 6.25% (3/48) 3.35 0.003187 0.036115
GO:0034109 homotypic cell-cell adhesion 2.08% (1/48) 8.08 0.00368 0.036152
GO:0042118 endothelial cell activation 2.08% (1/48) 8.08 0.00368 0.036152
GO:0060352 cell adhesion molecule production 2.08% (1/48) 8.08 0.00368 0.036152
GO:0061945 regulation of protein K48-linked ubiquitination 2.08% (1/48) 8.08 0.00368 0.036152
GO:0070527 platelet aggregation 2.08% (1/48) 8.08 0.00368 0.036152
GO:1902915 negative regulation of protein polyubiquitination 2.08% (1/48) 8.08 0.00368 0.036152
GO:0007174 epidermal growth factor catabolic process 2.08% (1/48) 8.08 0.00368 0.036152
GO:0022615 protein to membrane docking 2.08% (1/48) 8.08 0.00368 0.036152
GO:0045453 bone resorption 2.08% (1/48) 8.08 0.00368 0.036152
GO:0004035 alkaline phosphatase activity 2.08% (1/48) 8.08 0.00368 0.036152
GO:0098519 obsolete nucleotide phosphatase activity, acting on free nucleotides 2.08% (1/48) 8.08 0.00368 0.036152
GO:0007446 imaginal disc growth 2.08% (1/48) 8.08 0.00368 0.036152
GO:0050808 synapse organization 4.17% (2/48) 4.46 0.00377 0.036528
GO:2001020 regulation of response to DNA damage stimulus 6.25% (3/48) 3.26 0.003822 0.036777
GO:0090150 establishment of protein localization to membrane 6.25% (3/48) 3.34 0.003301 0.036808
GO:0032592 integral component of mitochondrial membrane 4.17% (2/48) 4.54 0.003381 0.036826
GO:0051173 positive regulation of nitrogen compound metabolic process 20.83% (10/48) 1.42 0.00338 0.037095
GO:0006886 intracellular protein transport 10.42% (5/48) 2.3 0.003364 0.037219
GO:0000329 fungal-type vacuole membrane 4.17% (2/48) 4.42 0.003972 0.037703
GO:0051258 protein polymerization 4.17% (2/48) 4.42 0.003972 0.037703
GO:0098588 bounding membrane of organelle 20.83% (10/48) 1.41 0.003535 0.0382
GO:0035967 cellular response to topologically incorrect protein 4.17% (2/48) 4.5 0.003573 0.038321
GO:0001650 fibrillar center 4.17% (2/48) 4.4 0.004074 0.038418
GO:0098573 intrinsic component of mitochondrial membrane 4.17% (2/48) 4.38 0.004178 0.038877
GO:0051603 proteolysis involved in protein catabolic process 10.42% (5/48) 2.23 0.004172 0.039076
GO:0099503 secretory vesicle 6.25% (3/48) 3.17 0.004528 0.041854
GO:0070534 protein K63-linked ubiquitination 4.17% (2/48) 4.31 0.004606 0.042299
GO:0043122 regulation of I-kappaB kinase/NF-kappaB signaling 4.17% (2/48) 4.29 0.004716 0.043029
GO:0048013 ephrin receptor signaling pathway 2.08% (1/48) 7.67 0.004903 0.043601
GO:0061724 lipophagy 2.08% (1/48) 7.67 0.004903 0.043601
GO:0008967 phosphoglycolate phosphatase activity 2.08% (1/48) 7.67 0.004903 0.043601
GO:0016480 negative regulation of transcription by RNA polymerase III 2.08% (1/48) 7.67 0.004903 0.043601
GO:0043408 regulation of MAPK cascade 6.25% (3/48) 3.11 0.005057 0.044682
GO:0009893 positive regulation of metabolic process 22.92% (11/48) 1.25 0.005151 0.045233
GO:0051050 positive regulation of transport 8.33% (4/48) 2.51 0.00534 0.046602
GO:0071840 cellular component organization or biogenesis 33.33% (16/48) 0.94 0.005581 0.048405
GO:0050897 cobalt ion binding 4.17% (2/48) 4.16 0.00564 0.048615
GO:0010604 positive regulation of macromolecule metabolic process 20.83% (10/48) 1.32 0.005696 0.048796
GO:0005654 nucleoplasm 14.58% (7/48) 1.68 0.005839 0.049127
GO:0032880 regulation of protein localization 8.33% (4/48) 2.47 0.00581 0.049175
GO:0001504 neurotransmitter uptake 2.08% (1/48) 7.35 0.006125 0.049177
GO:0030252 growth hormone secretion 2.08% (1/48) 7.35 0.006125 0.049177
GO:1902176 negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway 2.08% (1/48) 7.35 0.006125 0.049177
GO:1905394 retromer complex binding 2.08% (1/48) 7.35 0.006125 0.049177
GO:0099128 mitochondrial iron-sulfur cluster assembly complex 2.08% (1/48) 7.35 0.006125 0.049177
GO:0017054 negative cofactor 2 complex 2.08% (1/48) 7.35 0.006125 0.049177
GO:0031462 Cul2-RING ubiquitin ligase complex 2.08% (1/48) 7.35 0.006125 0.049177
GO:0007034 vacuolar transport 6.25% (3/48) 3.04 0.005781 0.049226
GO:0050708 regulation of protein secretion 4.17% (2/48) 4.08 0.006256 0.049942
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_212 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_260 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_3 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_18 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_81 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_128 0.015 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_134 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_179 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_181 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_183 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_187 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (48) (download table)

InterPro Domains

GO Terms

Family Terms