Coexpression cluster: Cluster_174 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0046916 cellular transition metal ion homeostasis 18.0% (9/50) 5.43 0.0 0.0
GO:0055076 transition metal ion homeostasis 18.0% (9/50) 4.83 0.0 0.0
GO:0000041 transition metal ion transport 18.0% (9/50) 4.87 0.0 0.0
GO:0046915 transition metal ion transmembrane transporter activity 14.0% (7/50) 5.51 0.0 0.0
GO:0006826 iron ion transport 14.0% (7/50) 5.32 0.0 0.0
GO:0006875 cellular metal ion homeostasis 18.0% (9/50) 4.22 0.0 0.0
GO:0006880 intracellular sequestering of iron ion 8.0% (4/50) 7.8 0.0 0.0
GO:0097577 sequestering of iron ion 8.0% (4/50) 7.29 0.0 1e-06
GO:0055082 cellular chemical homeostasis 20.0% (10/50) 3.52 0.0 1e-06
GO:0005381 iron ion transmembrane transporter activity 10.0% (5/50) 6.03 0.0 1e-06
GO:0030001 metal ion transport 20.0% (10/50) 3.55 0.0 1e-06
GO:0030003 cellular cation homeostasis 18.0% (9/50) 3.75 0.0 1e-06
GO:0006873 cellular ion homeostasis 18.0% (9/50) 3.67 0.0 2e-06
GO:0071421 manganese ion transmembrane transport 8.0% (4/50) 6.91 0.0 2e-06
GO:0006828 manganese ion transport 8.0% (4/50) 6.75 0.0 3e-06
GO:0019725 cellular homeostasis 20.0% (10/50) 3.25 0.0 4e-06
GO:0030026 cellular manganese ion homeostasis 8.0% (4/50) 6.61 0.0 4e-06
GO:0055065 metal ion homeostasis 18.0% (9/50) 3.47 0.0 4e-06
GO:0005384 manganese ion transmembrane transporter activity 8.0% (4/50) 6.48 0.0 5e-06
GO:0006812 cation transport 20.0% (10/50) 3.1 0.0 7e-06
GO:0055071 manganese ion homeostasis 8.0% (4/50) 6.33 0.0 7e-06
GO:0006811 ion transport 24.0% (12/50) 2.65 0.0 1e-05
GO:0034755 iron ion transmembrane transport 8.0% (4/50) 6.06 0.0 1.3e-05
GO:0051238 sequestering of metal ion 8.0% (4/50) 5.97 1e-06 1.6e-05
GO:0033214 siderophore-dependent iron import into cell 6.0% (3/50) 7.39 1e-06 2.1e-05
GO:0008324 cation transmembrane transporter activity 18.0% (9/50) 3.11 1e-06 2.3e-05
GO:0055080 cation homeostasis 18.0% (9/50) 3.11 1e-06 2.3e-05
GO:0000293 ferric-chelate reductase activity 6.0% (3/50) 7.29 1e-06 2.4e-05
GO:0046873 metal ion transmembrane transporter activity 14.0% (7/50) 3.72 1e-06 2.5e-05
GO:0015318 inorganic molecular entity transmembrane transporter activity 18.0% (9/50) 2.96 2e-06 4.4e-05
GO:0015075 ion transmembrane transporter activity 20.0% (10/50) 2.74 2e-06 4.5e-05
GO:0098771 inorganic ion homeostasis 18.0% (9/50) 2.97 2e-06 4.5e-05
GO:0006879 cellular iron ion homeostasis 8.0% (4/50) 5.5 2e-06 4.5e-05
GO:0016722 oxidoreductase activity, acting on metal ions 6.0% (3/50) 6.95 2e-06 4.5e-05
GO:0022890 inorganic cation transmembrane transporter activity 16.0% (8/50) 3.19 2e-06 5.1e-05
GO:0000329 fungal-type vacuole membrane 8.0% (4/50) 5.36 3e-06 5.9e-05
GO:1901678 iron coordination entity transport 6.0% (3/50) 6.5 5e-06 0.000102
GO:0050801 ion homeostasis 18.0% (9/50) 2.79 5e-06 0.000102
GO:0033212 iron import into cell 6.0% (3/50) 6.34 7e-06 0.000135
GO:0051651 maintenance of location in cell 8.0% (4/50) 4.83 1.2e-05 0.000232
GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor 6.0% (3/50) 5.99 1.5e-05 0.000271
GO:0098660 inorganic ion transmembrane transport 14.0% (7/50) 3.1 1.6e-05 0.000287
GO:0055072 iron ion homeostasis 8.0% (4/50) 4.7 1.7e-05 0.000304
GO:0034220 ion transmembrane transport 16.0% (8/50) 2.69 2.9e-05 0.0005
GO:0055085 transmembrane transport 20.0% (10/50) 2.28 3.1e-05 0.000507
GO:0045551 cinnamyl-alcohol dehydrogenase activity 6.0% (3/50) 5.64 3.1e-05 0.000511
GO:0098662 inorganic cation transmembrane transport 12.0% (6/50) 3.27 3.6e-05 0.000577
GO:0098657 import into cell 10.0% (5/50) 3.68 4.4e-05 0.000683
GO:0022857 transmembrane transporter activity 20.0% (10/50) 2.21 4.7e-05 0.000717
GO:0010039 response to iron ion 8.0% (4/50) 4.22 6.5e-05 0.000973
GO:0031640 killing of cells of another organism 6.0% (3/50) 5.26 6.7e-05 0.000988
GO:0015093 ferrous iron transmembrane transporter activity 4.0% (2/50) 7.29 7.2e-05 0.001033
GO:0005215 transporter activity 20.0% (10/50) 2.13 7.3e-05 0.001038
GO:0098655 cation transmembrane transport 12.0% (6/50) 3.05 8.3e-05 0.001152
GO:0001906 cell killing 6.0% (3/50) 5.03 0.00011 0.001476
GO:0048878 chemical homeostasis 20.0% (10/50) 2.06 0.000109 0.00149
GO:0051235 maintenance of location 8.0% (4/50) 3.95 0.000132 0.001709
GO:0098852 lytic vacuole membrane 8.0% (4/50) 3.95 0.000132 0.001709
GO:0052747 sinapyl alcohol dehydrogenase activity 4.0% (2/50) 6.61 0.00019 0.002415
GO:0009727 detection of ethylene stimulus 4.0% (2/50) 6.52 0.000215 0.002645
GO:0010274 hydrotropism 4.0% (2/50) 6.52 0.000215 0.002645
GO:0009605 response to external stimulus 42.0% (21/50) 1.08 0.000301 0.003641
GO:0042592 homeostatic process 20.0% (10/50) 1.87 0.000325 0.003864
GO:0071732 cellular response to nitric oxide 4.0% (2/50) 6.15 0.000364 0.004265
GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity 4.0% (2/50) 5.86 0.000551 0.006258
GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen 4.0% (2/50) 5.86 0.000551 0.006258
GO:0006810 transport 28.0% (14/50) 1.34 0.000813 0.00909
GO:0051234 establishment of localization 28.0% (14/50) 1.27 0.001258 0.013852
GO:0071398 cellular response to fatty acid 4.0% (2/50) 5.22 0.001336 0.014505
GO:0016651 oxidoreductase activity, acting on NAD(P)H 6.0% (3/50) 3.68 0.001683 0.018008
GO:0006801 superoxide metabolic process 4.0% (2/50) 4.88 0.00212 0.021747
GO:0071731 response to nitric oxide 4.0% (2/50) 4.88 0.00212 0.021747
GO:1902170 cellular response to reactive nitrogen species 4.0% (2/50) 4.88 0.00212 0.021747
GO:0009692 ethylene metabolic process 4.0% (2/50) 4.7 0.002707 0.026331
GO:0009693 ethylene biosynthetic process 4.0% (2/50) 4.7 0.002707 0.026331
GO:0043449 cellular alkene metabolic process 4.0% (2/50) 4.7 0.002707 0.026331
GO:0043450 alkene biosynthetic process 4.0% (2/50) 4.7 0.002707 0.026331
GO:0009720 detection of hormone stimulus 4.0% (2/50) 4.68 0.002796 0.026513
GO:0009726 detection of endogenous stimulus 4.0% (2/50) 4.68 0.002796 0.026513
GO:1900673 olefin metabolic process 4.0% (2/50) 4.5 0.003562 0.032934
GO:1900674 olefin biosynthetic process 4.0% (2/50) 4.5 0.003562 0.032934
GO:0022900 electron transport chain 6.0% (3/50) 3.28 0.003707 0.033859
GO:0072593 reactive oxygen species metabolic process 6.0% (3/50) 3.25 0.003925 0.034585
GO:0043207 response to external biotic stimulus 32.0% (16/50) 1.0 0.003853 0.034773
GO:0031669 cellular response to nutrient levels 10.0% (5/50) 2.25 0.00392 0.034951
GO:0070542 response to fatty acid 10.0% (5/50) 2.23 0.004125 0.03593
GO:0032541 cortical endoplasmic reticulum 4.0% (2/50) 4.38 0.004192 0.036093
GO:0012505 endomembrane system 8.0% (4/50) 2.57 0.004609 0.03879
GO:0009607 response to biotic stimulus 32.0% (16/50) 0.97 0.004566 0.038863
GO:0051179 localization 28.0% (14/50) 1.07 0.00477 0.039696
GO:0009809 lignin biosynthetic process 6.0% (3/50) 3.1 0.005184 0.040027
GO:0031667 response to nutrient levels 12.0% (6/50) 1.9 0.005133 0.040047
GO:0051707 response to other organism 30.0% (15/50) 1.0 0.00513 0.040449
GO:0052841 inositol bisdiphosphate tetrakisphosphate diphosphatase activity 2.0% (1/50) 7.61 0.005107 0.040693
GO:0052845 inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity 2.0% (1/50) 7.61 0.005107 0.040693
GO:0052847 inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity 2.0% (1/50) 7.61 0.005107 0.040693
GO:0106211 inositol-5-diphosphate-1,3,4,6-tetrakisphosphate diphosphatase activity 2.0% (1/50) 7.61 0.005107 0.040693
GO:0016491 oxidoreductase activity 18.0% (9/50) 1.43 0.005461 0.041739
GO:0015089 high-affinity copper ion transmembrane transporter activity 2.0% (1/50) 7.29 0.00638 0.047312
GO:0052840 inositol diphosphate tetrakisphosphate diphosphatase activity 2.0% (1/50) 7.29 0.00638 0.047312
GO:0052842 inositol diphosphate pentakisphosphate diphosphatase activity 2.0% (1/50) 7.29 0.00638 0.047312
GO:0044419 biological process involved in interspecies interaction between organisms 30.0% (15/50) 0.96 0.006708 0.049258
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_192 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_229 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_15 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_30 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_42 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_79 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_85 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_86 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_91 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_101 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_116 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_126 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_135 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_146 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_153 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_163 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_168 0.011 Orthogroups with 8 Potato genotypes Compare
Sequences (50) (download table)

InterPro Domains

GO Terms

Family Terms