Coexpression cluster: Cluster_252 (HCCA Clusters (HRR 50 & PCC 0.5))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006915 apoptotic process 9.62% (5/52) 4.97 1e-06 0.000711
GO:0003674 molecular_function 88.46% (46/52) 0.57 5e-06 0.001649
GO:0008219 cell death 17.31% (9/52) 2.81 5e-06 0.001871
GO:0008150 biological_process 90.38% (47/52) 0.55 3e-06 0.001935
GO:0005488 binding 78.85% (41/52) 0.66 1.8e-05 0.003767
GO:0009987 cellular process 80.77% (42/52) 0.63 1.8e-05 0.004432
GO:0110165 cellular anatomical entity 86.54% (45/52) 0.52 3.2e-05 0.004881
GO:0034605 cellular response to heat 9.62% (5/52) 3.7 4.2e-05 0.005113
GO:0070647 protein modification by small protein conjugation or removal 17.31% (9/52) 2.42 3.9e-05 0.005281
GO:1901565 organonitrogen compound catabolic process 17.31% (9/52) 2.46 3.1e-05 0.005489
GO:0005575 cellular_component 86.54% (45/52) 0.5 5.2e-05 0.005829
GO:0090357 regulation of tryptophan metabolic process 5.77% (3/52) 5.26 6.8e-05 0.006991
GO:0062211 root regeneration 3.85% (2/52) 7.23 7.8e-05 0.00731
GO:0016020 membrane 53.85% (28/52) 0.93 8.7e-05 0.007639
GO:0012501 programmed cell death 13.46% (7/52) 2.68 0.000102 0.007796
GO:0005886 plasma membrane 34.62% (18/52) 1.34 0.000109 0.007822
GO:0043067 regulation of programmed cell death 15.38% (8/52) 2.45 9.9e-05 0.008057
GO:0051603 proteolysis involved in protein catabolic process 13.46% (7/52) 2.6 0.000147 0.008562
GO:0016769 transferase activity, transferring nitrogenous groups 5.77% (3/52) 4.91 0.00014 0.008583
GO:0008483 transaminase activity 5.77% (3/52) 4.93 0.000135 0.008682
GO:0080169 cellular response to boron-containing substance deprivation 3.85% (2/52) 6.85 0.000134 0.009128
GO:0050794 regulation of cellular process 53.85% (28/52) 0.88 0.000169 0.009401
GO:0070483 detection of hypoxia 3.85% (2/52) 6.55 0.000206 0.010085
GO:0061630 ubiquitin protein ligase activity 9.62% (5/52) 3.21 0.000205 0.010475
GO:0003032 detection of oxygen 3.85% (2/52) 6.47 0.000233 0.010574
GO:0061659 ubiquitin-like protein ligase activity 9.62% (5/52) 3.18 0.000225 0.010581
GO:0008234 cysteine-type peptidase activity 7.69% (4/52) 3.79 0.000203 0.010811
GO:0033554 cellular response to stress 26.92% (14/52) 1.51 0.000249 0.010885
GO:0051716 cellular response to stimulus 34.62% (18/52) 1.23 0.000285 0.012025
GO:0050789 regulation of biological process 57.69% (30/52) 0.78 0.000301 0.012308
GO:0010941 regulation of cell death 15.38% (8/52) 2.19 0.000324 0.012812
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 5.77% (3/52) 4.48 0.000338 0.012921
GO:0007154 cell communication 15.38% (8/52) 2.16 0.000375 0.013126
GO:0006521 regulation of cellular amino acid metabolic process 5.77% (3/52) 4.45 0.000358 0.013271
GO:0010035 response to inorganic substance 26.92% (14/52) 1.45 0.000368 0.013272
GO:0004842 ubiquitin-protein transferase activity 11.54% (6/52) 2.63 0.000402 0.013671
GO:0019941 modification-dependent protein catabolic process 11.54% (6/52) 2.61 0.000441 0.013856
GO:0033238 regulation of cellular amine metabolic process 5.77% (3/52) 4.36 0.000433 0.013973
GO:0006508 proteolysis 15.38% (8/52) 2.12 0.00046 0.014088
GO:0016567 protein ubiquitination 13.46% (7/52) 2.32 0.000472 0.014102
GO:0006511 ubiquitin-dependent protein catabolic process 11.54% (6/52) 2.61 0.000429 0.014194
GO:0019787 ubiquitin-like protein transferase activity 11.54% (6/52) 2.58 0.00049 0.014298
GO:0043632 modification-dependent macromolecule catabolic process 11.54% (6/52) 2.55 0.000532 0.015169
GO:0004197 cysteine-type endopeptidase activity 5.77% (3/52) 4.18 0.000615 0.015688
GO:0010286 heat acclimation 7.69% (4/52) 3.36 0.000631 0.015772
GO:0140096 catalytic activity, acting on a protein 26.92% (14/52) 1.38 0.000614 0.016002
GO:0003824 catalytic activity 55.77% (29/52) 0.76 0.000601 0.016011
GO:0071496 cellular response to external stimulus 13.46% (7/52) 2.26 0.000598 0.016286
GO:0032446 protein modification by small protein conjugation 13.46% (7/52) 2.27 0.000585 0.016301
GO:1901564 organonitrogen compound metabolic process 42.31% (22/52) 0.96 0.000712 0.016763
GO:0006970 response to osmotic stress 19.23% (10/52) 1.74 0.000687 0.016821
GO:0009651 response to salt stress 17.31% (9/52) 1.86 0.000705 0.016925
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 7.69% (4/52) 3.27 0.000797 0.017134
GO:1901420 negative regulation of response to alcohol 7.69% (4/52) 3.27 0.000797 0.017134
GO:1905958 negative regulation of cellular response to alcohol 7.69% (4/52) 3.27 0.000797 0.017134
GO:0031669 cellular response to nutrient levels 11.54% (6/52) 2.46 0.000754 0.017433
GO:0010498 proteasomal protein catabolic process 9.62% (5/52) 2.76 0.000836 0.017663
GO:0071454 cellular response to anoxia 3.85% (2/52) 5.6 0.000787 0.017863
GO:0001101 response to acid chemical 17.31% (9/52) 1.78 0.001051 0.021825
GO:0031966 mitochondrial membrane 7.69% (4/52) 3.14 0.00112 0.02286
GO:0030170 pyridoxal phosphate binding 5.77% (3/52) 3.8 0.001331 0.023621
GO:0070279 vitamin B6 binding 5.77% (3/52) 3.79 0.001354 0.023698
GO:0080029 cellular response to boron-containing substance levels 3.85% (2/52) 5.2 0.001377 0.023755
GO:0098631 cell adhesion mediator activity 1.92% (1/52) 9.55 0.00133 0.023966
GO:0098632 cell-cell adhesion mediator activity 1.92% (1/52) 9.55 0.00133 0.023966
GO:0098641 cadherin binding involved in cell-cell adhesion 1.92% (1/52) 9.55 0.00133 0.023966
GO:0032353 negative regulation of hormone biosynthetic process 1.92% (1/52) 9.55 0.00133 0.023966
GO:1901996 regulation of indoleacetic acid biosynthetic process via tryptophan 1.92% (1/52) 9.55 0.00133 0.023966
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 1.92% (1/52) 9.55 0.00133 0.023966
GO:0046395 carboxylic acid catabolic process 7.69% (4/52) 3.03 0.001451 0.024683
GO:0030163 protein catabolic process 9.62% (5/52) 2.57 0.00151 0.025346
GO:1901575 organic substance catabolic process 21.15% (11/52) 1.51 0.001328 0.026229
GO:0046487 glyoxylate metabolic process 3.85% (2/52) 5.23 0.001311 0.026323
GO:0010036 response to boron-containing substance 3.85% (2/52) 5.06 0.001657 0.026356
GO:0071497 cellular response to freezing 3.85% (2/52) 5.06 0.001657 0.026356
GO:0065007 biological regulation 57.69% (30/52) 0.65 0.001646 0.02689
GO:0006950 response to stress 48.08% (25/52) 0.78 0.001639 0.02713
GO:1902074 response to salt 5.77% (3/52) 3.66 0.001742 0.027354
GO:0006536 glutamate metabolic process 3.85% (2/52) 5.0 0.001806 0.028002
GO:0009267 cellular response to starvation 9.62% (5/52) 2.49 0.001924 0.028741
GO:0016651 oxidoreductase activity, acting on NAD(P)H 5.77% (3/52) 3.62 0.001885 0.02886
GO:1901606 alpha-amino acid catabolic process 5.77% (3/52) 3.62 0.001914 0.028949
GO:0051301 cell division 9.62% (5/52) 2.48 0.002013 0.029711
GO:0016054 organic acid catabolic process 7.69% (4/52) 2.88 0.002133 0.031102
GO:1901419 regulation of response to alcohol 9.62% (5/52) 2.45 0.002214 0.031178
GO:1905957 regulation of cellular response to alcohol 9.62% (5/52) 2.45 0.002214 0.031178
GO:0009787 regulation of abscisic acid-activated signaling pathway 9.62% (5/52) 2.45 0.002187 0.031514
GO:0009700 indole phytoalexin biosynthetic process 3.85% (2/52) 4.7 0.002736 0.031616
GO:0010120 camalexin biosynthetic process 3.85% (2/52) 4.7 0.002736 0.031616
GO:0046217 indole phytoalexin metabolic process 3.85% (2/52) 4.7 0.002736 0.031616
GO:0052317 camalexin metabolic process 3.85% (2/52) 4.7 0.002736 0.031616
GO:0007418 ventral midline development 1.92% (1/52) 8.55 0.002659 0.031933
GO:0016223 beta-alanine-pyruvate transaminase activity 1.92% (1/52) 8.55 0.002659 0.031933
GO:0019481 L-alanine catabolic process, by transamination 1.92% (1/52) 8.55 0.002659 0.031933
GO:0050459 ethanolamine-phosphate phospho-lyase activity 1.92% (1/52) 8.55 0.002659 0.031933
GO:0090324 negative regulation of oxidative phosphorylation 1.92% (1/52) 8.55 0.002659 0.031933
GO:1901856 negative regulation of cellular respiration 1.92% (1/52) 8.55 0.002659 0.031933
GO:1902957 negative regulation of mitochondrial electron transport, NADH to ubiquinone 1.92% (1/52) 8.55 0.002659 0.031933
GO:1905447 negative regulation of mitochondrial ATP synthesis coupled electron transport 1.92% (1/52) 8.55 0.002659 0.031933
GO:0010917 negative regulation of mitochondrial membrane potential 1.92% (1/52) 8.55 0.002659 0.031933
GO:0045837 negative regulation of membrane potential 1.92% (1/52) 8.55 0.002659 0.031933
GO:0009414 response to water deprivation 15.38% (8/52) 1.75 0.002309 0.032147
GO:0009063 cellular amino acid catabolic process 5.77% (3/52) 3.5 0.002425 0.033377
GO:0008233 peptidase activity 9.62% (5/52) 2.35 0.002975 0.033431
GO:0008152 metabolic process 59.62% (31/52) 0.59 0.002926 0.033494
GO:0009415 response to water 15.38% (8/52) 1.7 0.002968 0.033668
GO:0009408 response to heat 11.54% (6/52) 2.12 0.002485 0.033823
GO:0044265 cellular macromolecule catabolic process 11.54% (6/52) 2.06 0.003093 0.034137
GO:0043065 positive regulation of apoptotic process 5.77% (3/52) 3.37 0.003092 0.034434
GO:0044248 cellular catabolic process 19.23% (10/52) 1.48 0.002622 0.034912
GO:0031668 cellular response to extracellular stimulus 11.54% (6/52) 2.11 0.002606 0.035081
GO:1901698 response to nitrogen compound 15.38% (8/52) 1.66 0.003514 0.03809
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate 1.92% (1/52) 7.97 0.003986 0.038145
GO:0004613 phosphoenolpyruvate carboxykinase (GTP) activity 1.92% (1/52) 7.97 0.003986 0.038145
GO:0003867 4-aminobutyrate transaminase activity 1.92% (1/52) 7.97 0.003986 0.038145
GO:0009447 putrescine catabolic process 1.92% (1/52) 7.97 0.003986 0.038145
GO:0034387 4-aminobutyrate:pyruvate transaminase activity 1.92% (1/52) 7.97 0.003986 0.038145
GO:0045303 diaminobutyrate-2-oxoglutarate transaminase activity 1.92% (1/52) 7.97 0.003986 0.038145
GO:0102351 gamma-aminobutyrate transaminase (glyoxylate dependent) activity 1.92% (1/52) 7.97 0.003986 0.038145
GO:0019679 propionate metabolic process, methylcitrate cycle 1.92% (1/52) 7.97 0.003986 0.038145
GO:0030350 iron-responsive element binding 1.92% (1/52) 7.97 0.003986 0.038145
GO:0047456 2-methylisocitrate dehydratase activity 1.92% (1/52) 7.97 0.003986 0.038145
GO:0006082 organic acid metabolic process 19.23% (10/52) 1.42 0.00351 0.038386
GO:0019842 vitamin binding 5.77% (3/52) 3.27 0.003771 0.040522
GO:0006807 nitrogen compound metabolic process 46.15% (24/52) 0.72 0.003841 0.040559
GO:0009056 catabolic process 21.15% (11/52) 1.31 0.003816 0.040644
GO:0050896 response to stimulus 57.69% (30/52) 0.57 0.004297 0.040801
GO:0010506 regulation of autophagy 5.77% (3/52) 3.25 0.003908 0.040913
GO:0070370 cellular heat acclimation 3.85% (2/52) 4.42 0.003956 0.041072
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 7.69% (4/52) 2.56 0.004729 0.04422
GO:0048366 leaf development 7.69% (4/52) 2.56 0.004696 0.044254
GO:0016036 cellular response to phosphate starvation 5.77% (3/52) 3.13 0.004896 0.045434
GO:0010200 response to chitin 9.62% (5/52) 2.17 0.004962 0.045706
GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity 1.92% (1/52) 7.55 0.005311 0.046471
GO:1905446 regulation of mitochondrial ATP synthesis coupled electron transport 1.92% (1/52) 7.55 0.005311 0.046471
GO:0004015 adenosylmethionine-8-amino-7-oxononanoate transaminase activity 1.92% (1/52) 7.55 0.005311 0.046471
GO:0042400 ectoine catabolic process 1.92% (1/52) 7.55 0.005311 0.046471
GO:0004325 ferrochelatase activity 1.92% (1/52) 7.55 0.005311 0.046471
GO:0042594 response to starvation 9.62% (5/52) 2.16 0.005113 0.046745
GO:0036211 protein modification process 23.08% (12/52) 1.18 0.005194 0.047127
GO:0009266 response to temperature stimulus 17.31% (9/52) 1.43 0.005557 0.047936
GO:0044237 cellular metabolic process 51.92% (27/52) 0.62 0.005556 0.048274
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 3.85% (2/52) 4.14 0.005775 0.049124
GO:0034059 response to anoxia 3.85% (2/52) 4.14 0.005775 0.049124
GO:0010038 response to metal ion 13.46% (7/52) 1.68 0.005835 0.049294
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_260 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_96 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_112 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_126 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_161 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_169 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_202 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_205 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_242 0.016 Orthogroups with 8 Potato genotypes Compare
Sequences (52) (download table)

InterPro Domains

GO Terms

Family Terms